Experiment: Kanamycin sulfate stress 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS22340 and ABZR88_RS22345 are separated by 102 nucleotides ABZR88_RS22345 and ABZR88_RS22350 overlap by 20 nucleotides ABZR88_RS22350 and ABZR88_RS22355 overlap by 4 nucleotides
ABZR88_RS22340: ABZR88_RS22340 - tRNA dihydrouridine synthase DusB, at 5,351,608 to 5,352,600
_RS22340
ABZR88_RS22345: ABZR88_RS22345 - CPBP family intramembrane glutamic endopeptidase, at 5,352,703 to 5,353,599
_RS22345
ABZR88_RS22350: ABZR88_RS22350 - DUF2007 domain-containing protein, at 5,353,580 to 5,353,795
_RS22350
ABZR88_RS22355: ABZR88_RS22355 - phosphatidate cytidylyltransferase, at 5,353,792 to 5,354,631
_RS22355
Position (kb) 5353
5354 Strain fitness (log2 ratio) -2
-1
0
1 at 5352.606 kb on + strand at 5352.826 kb on + strand, within ABZR88_RS22345 at 5352.827 kb on - strand, within ABZR88_RS22345 at 5352.830 kb on + strand, within ABZR88_RS22345 at 5352.830 kb on + strand, within ABZR88_RS22345 at 5352.843 kb on + strand, within ABZR88_RS22345 at 5352.843 kb on + strand, within ABZR88_RS22345 at 5352.927 kb on + strand, within ABZR88_RS22345 at 5352.965 kb on + strand, within ABZR88_RS22345 at 5353.072 kb on - strand, within ABZR88_RS22345 at 5353.072 kb on - strand, within ABZR88_RS22345 at 5353.471 kb on - strand, within ABZR88_RS22345 at 5353.474 kb on - strand, within ABZR88_RS22345 at 5353.652 kb on - strand, within ABZR88_RS22350 at 5353.678 kb on + strand, within ABZR88_RS22350 at 5353.732 kb on - strand, within ABZR88_RS22350 at 5353.732 kb on - strand, within ABZR88_RS22350 at 5354.641 kb on + strand at 5354.701 kb on - strand at 5354.771 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Kanamycin sulfate stress 0.05 mg/ml remove 5,352,606 + -0.3 5,352,826 + ABZR88_RS22345 0.14 -1.6 5,352,827 - ABZR88_RS22345 0.14 -0.5 5,352,830 + ABZR88_RS22345 0.14 -1.3 5,352,830 + ABZR88_RS22345 0.14 -1.3 5,352,843 + ABZR88_RS22345 0.16 -1.4 5,352,843 + ABZR88_RS22345 0.16 -2.1 5,352,927 + ABZR88_RS22345 0.25 -1.5 5,352,965 + ABZR88_RS22345 0.29 -1.5 5,353,072 - ABZR88_RS22345 0.41 -0.1 5,353,072 - ABZR88_RS22345 0.41 -1.2 5,353,471 - ABZR88_RS22345 0.86 -1.7 5,353,474 - ABZR88_RS22345 0.86 -1.9 5,353,652 - ABZR88_RS22350 0.33 +0.2 5,353,678 + ABZR88_RS22350 0.45 -0.1 5,353,732 - ABZR88_RS22350 0.70 +0.5 5,353,732 - ABZR88_RS22350 0.70 -0.2 5,354,641 + +0.1 5,354,701 - +0.1 5,354,771 - +1.2
Or see this region's nucleotide sequence