Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS15490

Experiment: Kanamycin sulfate stress 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS15480 and ABZR88_RS15485 are separated by 86 nucleotidesABZR88_RS15485 and ABZR88_RS15490 overlap by 4 nucleotidesABZR88_RS15490 and ABZR88_RS15495 are separated by 239 nucleotides ABZR88_RS15480: ABZR88_RS15480 - enoyl-CoA hydratase/isomerase family protein, at 3,829,496 to 3,830,272 _RS15480 ABZR88_RS15485: ABZR88_RS15485 - chaperone modulator CbpM, at 3,830,359 to 3,830,655 _RS15485 ABZR88_RS15490: ABZR88_RS15490 - DnaJ C-terminal domain-containing protein, at 3,830,652 to 3,831,572 _RS15490 ABZR88_RS15495: ABZR88_RS15495 - acetylornithine carbamoyltransferase, at 3,831,812 to 3,832,759 _RS15495 Position (kb) 3830 3831 3832Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3829.789 kb on + strand, within ABZR88_RS15480at 3829.789 kb on + strand, within ABZR88_RS15480at 3829.819 kb on - strand, within ABZR88_RS15480at 3829.895 kb on + strand, within ABZR88_RS15480at 3829.895 kb on - strand, within ABZR88_RS15480at 3829.895 kb on - strand, within ABZR88_RS15480at 3829.895 kb on - strand, within ABZR88_RS15480at 3830.054 kb on + strand, within ABZR88_RS15480at 3830.245 kb on - strandat 3830.348 kb on + strandat 3830.380 kb on + strandat 3830.512 kb on + strand, within ABZR88_RS15485at 3830.731 kb on - strandat 3830.811 kb on - strand, within ABZR88_RS15490at 3830.899 kb on + strand, within ABZR88_RS15490at 3830.900 kb on - strand, within ABZR88_RS15490at 3830.908 kb on - strand, within ABZR88_RS15490at 3830.908 kb on - strand, within ABZR88_RS15490at 3830.908 kb on - strand, within ABZR88_RS15490at 3831.055 kb on - strand, within ABZR88_RS15490at 3831.145 kb on - strand, within ABZR88_RS15490at 3831.288 kb on - strand, within ABZR88_RS15490at 3831.586 kb on + strandat 3831.623 kb on - strandat 3831.715 kb on + strandat 3831.767 kb on + strandat 3831.785 kb on - strandat 3831.802 kb on - strandat 3831.954 kb on - strand, within ABZR88_RS15495at 3832.251 kb on - strand, within ABZR88_RS15495at 3832.490 kb on + strand, within ABZR88_RS15495

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Per-strain Table

Position Strand Gene LocusTag Fraction Kanamycin sulfate stress 0.05 mg/ml
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3,829,789 + ABZR88_RS15480 0.38 -1.3
3,829,789 + ABZR88_RS15480 0.38 +0.5
3,829,819 - ABZR88_RS15480 0.42 -0.6
3,829,895 + ABZR88_RS15480 0.51 -0.3
3,829,895 - ABZR88_RS15480 0.51 -2.0
3,829,895 - ABZR88_RS15480 0.51 -0.6
3,829,895 - ABZR88_RS15480 0.51 +0.2
3,830,054 + ABZR88_RS15480 0.72 +0.5
3,830,245 - -0.2
3,830,348 + +2.9
3,830,380 + -0.1
3,830,512 + ABZR88_RS15485 0.52 +0.1
3,830,731 - -0.4
3,830,811 - ABZR88_RS15490 0.17 +0.0
3,830,899 + ABZR88_RS15490 0.27 -0.5
3,830,900 - ABZR88_RS15490 0.27 -1.1
3,830,908 - ABZR88_RS15490 0.28 +0.0
3,830,908 - ABZR88_RS15490 0.28 -0.1
3,830,908 - ABZR88_RS15490 0.28 -0.9
3,831,055 - ABZR88_RS15490 0.44 -1.1
3,831,145 - ABZR88_RS15490 0.54 +0.6
3,831,288 - ABZR88_RS15490 0.69 -0.3
3,831,586 + +1.1
3,831,623 - +1.3
3,831,715 + -0.0
3,831,767 + -0.3
3,831,785 - -0.1
3,831,802 - +0.2
3,831,954 - ABZR88_RS15495 0.15 +0.3
3,832,251 - ABZR88_RS15495 0.46 -1.3
3,832,490 + ABZR88_RS15495 0.72 +0.9

Or see this region's nucleotide sequence