Experiment: Esculin Monohydrate stress 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS18730 and ABZR88_RS18735 are separated by 54 nucleotides ABZR88_RS18735 and ABZR88_RS18740 are separated by 9 nucleotides ABZR88_RS18740 and ABZR88_RS18745 overlap by 18 nucleotides ABZR88_RS18745 and ABZR88_RS18750 are separated by 89 nucleotides
ABZR88_RS18730: ABZR88_RS18730 - glutamate--tRNA ligase, at 4,582,378 to 4,583,898
_RS18730
ABZR88_RS18735: ABZR88_RS18735 - hypothetical protein, at 4,583,953 to 4,584,183
_RS18735
ABZR88_RS18740: ABZR88_RS18740 - putative toxin-antitoxin system toxin component, PIN family, at 4,584,193 to 4,584,597
_RS18740
ABZR88_RS18745: ABZR88_RS18745 - TfoX/Sxy family protein, at 4,584,580 to 4,584,960
_RS18745
ABZR88_RS18750: ABZR88_RS18750 - D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase, at 4,585,050 to 4,586,366
_RS18750
Position (kb) 4584
4585 Strain fitness (log2 ratio) -1
0
1 at 4583.901 kb on - strand at 4584.419 kb on - strand, within ABZR88_RS18740 at 4584.479 kb on + strand, within ABZR88_RS18740 at 4584.479 kb on + strand, within ABZR88_RS18740 at 4584.671 kb on - strand, within ABZR88_RS18745 at 4584.716 kb on - strand, within ABZR88_RS18745 at 4584.751 kb on + strand, within ABZR88_RS18745 at 4584.808 kb on - strand, within ABZR88_RS18745 at 4585.070 kb on - strand at 4585.187 kb on + strand, within ABZR88_RS18750 at 4585.283 kb on + strand, within ABZR88_RS18750 at 4585.375 kb on + strand, within ABZR88_RS18750 at 4585.447 kb on + strand, within ABZR88_RS18750 at 4585.448 kb on - strand, within ABZR88_RS18750 at 4585.448 kb on - strand, within ABZR88_RS18750 at 4585.452 kb on - strand, within ABZR88_RS18750 at 4585.466 kb on + strand, within ABZR88_RS18750 at 4585.569 kb on - strand, within ABZR88_RS18750
Per-strain Table
Position Strand Gene LocusTag Fraction Esculin Monohydrate stress 5 mM remove 4,583,901 - +0.9 4,584,419 - ABZR88_RS18740 0.56 +0.1 4,584,479 + ABZR88_RS18740 0.71 +0.2 4,584,479 + ABZR88_RS18740 0.71 -0.0 4,584,671 - ABZR88_RS18745 0.24 -0.4 4,584,716 - ABZR88_RS18745 0.36 +0.1 4,584,751 + ABZR88_RS18745 0.45 +0.4 4,584,808 - ABZR88_RS18745 0.60 +0.6 4,585,070 - -0.1 4,585,187 + ABZR88_RS18750 0.10 +0.0 4,585,283 + ABZR88_RS18750 0.18 -0.2 4,585,375 + ABZR88_RS18750 0.25 -0.1 4,585,447 + ABZR88_RS18750 0.30 +0.2 4,585,448 - ABZR88_RS18750 0.30 +0.3 4,585,448 - ABZR88_RS18750 0.30 -0.1 4,585,452 - ABZR88_RS18750 0.31 -0.1 4,585,466 + ABZR88_RS18750 0.32 +0.2 4,585,569 - ABZR88_RS18750 0.39 +1.2
Or see this region's nucleotide sequence