Experiment: Quercetin stress 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS15365 and ABZR88_RS15370 are separated by 89 nucleotides ABZR88_RS15370 and ABZR88_RS15375 are separated by 263 nucleotides
ABZR88_RS15365: ABZR88_RS15365 - hypothetical protein, at 3,801,835 to 3,804,612
_RS15365
ABZR88_RS15370: ABZR88_RS15370 - transcriptional regulator, at 3,804,702 to 3,805,112
_RS15370
ABZR88_RS15375: ABZR88_RS15375 - TonB-dependent receptor, at 3,805,376 to 3,807,832
_RS15375
Position (kb)
3804
3805
3806 Strain fitness (log2 ratio)
-2
-1
0
1 at 3803.846 kb on - strand, within ABZR88_RS15365 at 3803.895 kb on - strand, within ABZR88_RS15365 at 3803.961 kb on + strand, within ABZR88_RS15365 at 3803.961 kb on + strand, within ABZR88_RS15365 at 3804.066 kb on + strand, within ABZR88_RS15365 at 3804.066 kb on + strand, within ABZR88_RS15365 at 3804.067 kb on - strand, within ABZR88_RS15365 at 3804.127 kb on + strand, within ABZR88_RS15365 at 3804.295 kb on + strand, within ABZR88_RS15365 at 3804.296 kb on - strand, within ABZR88_RS15365 at 3804.409 kb on + strand at 3804.409 kb on + strand at 3804.670 kb on + strand at 3804.915 kb on + strand, within ABZR88_RS15370 at 3804.951 kb on + strand, within ABZR88_RS15370 at 3804.952 kb on - strand, within ABZR88_RS15370 at 3805.110 kb on + strand at 3805.114 kb on + strand at 3805.162 kb on + strand at 3805.320 kb on + strand at 3805.377 kb on + strand at 3805.660 kb on - strand, within ABZR88_RS15375 at 3805.767 kb on + strand, within ABZR88_RS15375 at 3805.768 kb on - strand, within ABZR88_RS15375 at 3805.771 kb on + strand, within ABZR88_RS15375 at 3805.771 kb on + strand, within ABZR88_RS15375 at 3805.894 kb on + strand, within ABZR88_RS15375 at 3805.948 kb on + strand, within ABZR88_RS15375 at 3806.059 kb on - strand, within ABZR88_RS15375 at 3806.059 kb on - strand, within ABZR88_RS15375 at 3806.073 kb on - strand, within ABZR88_RS15375 at 3806.104 kb on - strand, within ABZR88_RS15375
Per-strain Table
Position Strand Gene LocusTag Fraction Quercetin stress 0.05 mg/ml remove 3,803,846 - ABZR88_RS15365 0.72 -0.1 3,803,895 - ABZR88_RS15365 0.74 +0.3 3,803,961 + ABZR88_RS15365 0.77 -1.4 3,803,961 + ABZR88_RS15365 0.77 -0.3 3,804,066 + ABZR88_RS15365 0.80 -0.1 3,804,066 + ABZR88_RS15365 0.80 -0.1 3,804,067 - ABZR88_RS15365 0.80 +0.3 3,804,127 + ABZR88_RS15365 0.83 -0.2 3,804,295 + ABZR88_RS15365 0.89 -1.8 3,804,296 - ABZR88_RS15365 0.89 +0.2 3,804,409 + -0.1 3,804,409 + -0.4 3,804,670 + -0.8 3,804,915 + ABZR88_RS15370 0.52 -0.6 3,804,951 + ABZR88_RS15370 0.61 +0.2 3,804,952 - ABZR88_RS15370 0.61 -0.1 3,805,110 + -0.2 3,805,114 + -0.3 3,805,162 + -0.1 3,805,320 + -0.2 3,805,377 + -0.0 3,805,660 - ABZR88_RS15375 0.12 -0.2 3,805,767 + ABZR88_RS15375 0.16 -0.1 3,805,768 - ABZR88_RS15375 0.16 +0.1 3,805,771 + ABZR88_RS15375 0.16 +1.2 3,805,771 + ABZR88_RS15375 0.16 -0.0 3,805,894 + ABZR88_RS15375 0.21 +0.2 3,805,948 + ABZR88_RS15375 0.23 -0.4 3,806,059 - ABZR88_RS15375 0.28 +0.3 3,806,059 - ABZR88_RS15375 0.28 +0.5 3,806,073 - ABZR88_RS15375 0.28 -0.2 3,806,104 - ABZR88_RS15375 0.30 -0.3
Or see this region's nucleotide sequence