Experiment: Quercetin stress 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS08790 and ABZR88_RS08795 are separated by 329 nucleotides ABZR88_RS08795 and ABZR88_RS08800 are separated by 233 nucleotides
ABZR88_RS08790: ABZR88_RS08790 - RagB/SusD family nutrient uptake outer membrane protein, at 2,213,234 to 2,215,213
_RS08790
ABZR88_RS08795: ABZR88_RS08795 - beta-galactosidase GalB, at 2,215,543 to 2,218,326
_RS08795
ABZR88_RS08800: ABZR88_RS08800 - glycoside hydrolase 43 family protein, at 2,218,560 to 2,220,110
_RS08800
Position (kb)
2215
2216
2217
2218
2219 Strain fitness (log2 ratio)
-1
0
1 at 2214.721 kb on + strand, within ABZR88_RS08790 at 2214.794 kb on - strand, within ABZR88_RS08790 at 2214.800 kb on - strand, within ABZR88_RS08790 at 2214.947 kb on + strand, within ABZR88_RS08790 at 2215.009 kb on - strand, within ABZR88_RS08790 at 2215.132 kb on - strand at 2215.132 kb on - strand at 2215.237 kb on + strand at 2215.239 kb on + strand at 2215.239 kb on + strand at 2215.239 kb on + strand at 2215.291 kb on - strand at 2215.294 kb on + strand at 2215.297 kb on + strand at 2215.421 kb on + strand at 2215.424 kb on + strand at 2215.831 kb on - strand, within ABZR88_RS08795 at 2215.954 kb on + strand, within ABZR88_RS08795 at 2215.955 kb on - strand, within ABZR88_RS08795 at 2216.080 kb on + strand, within ABZR88_RS08795 at 2216.215 kb on - strand, within ABZR88_RS08795 at 2216.316 kb on - strand, within ABZR88_RS08795 at 2216.357 kb on - strand, within ABZR88_RS08795 at 2216.574 kb on - strand, within ABZR88_RS08795 at 2216.753 kb on + strand, within ABZR88_RS08795 at 2217.095 kb on + strand, within ABZR88_RS08795 at 2217.099 kb on + strand, within ABZR88_RS08795 at 2217.099 kb on + strand, within ABZR88_RS08795 at 2217.286 kb on - strand, within ABZR88_RS08795 at 2217.380 kb on + strand, within ABZR88_RS08795 at 2217.400 kb on + strand, within ABZR88_RS08795 at 2217.401 kb on - strand, within ABZR88_RS08795 at 2217.401 kb on - strand, within ABZR88_RS08795 at 2217.430 kb on + strand, within ABZR88_RS08795 at 2217.431 kb on - strand, within ABZR88_RS08795 at 2217.535 kb on + strand, within ABZR88_RS08795 at 2217.745 kb on - strand, within ABZR88_RS08795 at 2217.971 kb on + strand, within ABZR88_RS08795 at 2218.234 kb on - strand at 2218.302 kb on + strand at 2218.668 kb on + strand at 2218.671 kb on - strand at 2218.731 kb on + strand, within ABZR88_RS08800 at 2218.853 kb on + strand, within ABZR88_RS08800 at 2218.904 kb on + strand, within ABZR88_RS08800 at 2218.933 kb on + strand, within ABZR88_RS08800 at 2219.078 kb on + strand, within ABZR88_RS08800 at 2219.078 kb on + strand, within ABZR88_RS08800 at 2219.079 kb on - strand, within ABZR88_RS08800 at 2219.126 kb on + strand, within ABZR88_RS08800
Per-strain Table
Position Strand Gene LocusTag Fraction Quercetin stress 0.05 mg/ml remove 2,214,721 + ABZR88_RS08790 0.75 -0.3 2,214,794 - ABZR88_RS08790 0.79 +0.4 2,214,800 - ABZR88_RS08790 0.79 -0.1 2,214,947 + ABZR88_RS08790 0.87 -1.3 2,215,009 - ABZR88_RS08790 0.90 -0.7 2,215,132 - -0.3 2,215,132 - -0.1 2,215,237 + +1.1 2,215,239 + -0.1 2,215,239 + +0.0 2,215,239 + -0.1 2,215,291 - +0.1 2,215,294 + -0.3 2,215,297 + -0.0 2,215,421 + -0.1 2,215,424 + +1.1 2,215,831 - ABZR88_RS08795 0.10 -0.4 2,215,954 + ABZR88_RS08795 0.15 -0.5 2,215,955 - ABZR88_RS08795 0.15 -0.0 2,216,080 + ABZR88_RS08795 0.19 +1.4 2,216,215 - ABZR88_RS08795 0.24 -0.0 2,216,316 - ABZR88_RS08795 0.28 -0.9 2,216,357 - ABZR88_RS08795 0.29 -0.1 2,216,574 - ABZR88_RS08795 0.37 -0.1 2,216,753 + ABZR88_RS08795 0.43 -0.6 2,217,095 + ABZR88_RS08795 0.56 -0.1 2,217,099 + ABZR88_RS08795 0.56 -0.0 2,217,099 + ABZR88_RS08795 0.56 -0.1 2,217,286 - ABZR88_RS08795 0.63 +0.2 2,217,380 + ABZR88_RS08795 0.66 -0.0 2,217,400 + ABZR88_RS08795 0.67 +0.1 2,217,401 - ABZR88_RS08795 0.67 +0.4 2,217,401 - ABZR88_RS08795 0.67 -0.1 2,217,430 + ABZR88_RS08795 0.68 -0.1 2,217,431 - ABZR88_RS08795 0.68 -0.8 2,217,535 + ABZR88_RS08795 0.72 -0.9 2,217,745 - ABZR88_RS08795 0.79 +0.3 2,217,971 + ABZR88_RS08795 0.87 -1.0 2,218,234 - +1.5 2,218,302 + +0.7 2,218,668 + -0.3 2,218,671 - +0.0 2,218,731 + ABZR88_RS08800 0.11 -0.0 2,218,853 + ABZR88_RS08800 0.19 +0.7 2,218,904 + ABZR88_RS08800 0.22 +0.1 2,218,933 + ABZR88_RS08800 0.24 -0.4 2,219,078 + ABZR88_RS08800 0.33 -0.2 2,219,078 + ABZR88_RS08800 0.33 -0.2 2,219,079 - ABZR88_RS08800 0.33 -0.4 2,219,126 + ABZR88_RS08800 0.36 +0.1
Or see this region's nucleotide sequence