Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS06660

Experiment: copper (II) chloride stress 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS06650 and ABZR88_RS06655 are separated by 165 nucleotidesABZR88_RS06655 and ABZR88_RS06660 are separated by 61 nucleotidesABZR88_RS06660 and ABZR88_RS06665 are separated by 77 nucleotides ABZR88_RS06650: ABZR88_RS06650 - cyclic dehypoxanthinyl futalosine synthase, at 1,633,473 to 1,634,597 _RS06650 ABZR88_RS06655: ABZR88_RS06655 - hypothetical protein, at 1,634,763 to 1,635,515 _RS06655 ABZR88_RS06660: ABZR88_RS06660 - hypothetical protein, at 1,635,577 to 1,635,774 _RS06660 ABZR88_RS06665: ABZR88_RS06665 - arginine deiminase family protein, at 1,635,852 to 1,637,300 _RS06665 Position (kb) 1635 1636Strain fitness (log2 ratio) -2 -1 0 1at 1634.598 kb on - strandat 1634.719 kb on - strandat 1634.740 kb on - strandat 1634.837 kb on + strandat 1634.837 kb on + strandat 1634.888 kb on - strand, within ABZR88_RS06655at 1634.908 kb on + strand, within ABZR88_RS06655at 1634.909 kb on - strand, within ABZR88_RS06655at 1634.940 kb on - strand, within ABZR88_RS06655at 1634.960 kb on + strand, within ABZR88_RS06655at 1634.983 kb on + strand, within ABZR88_RS06655at 1635.102 kb on - strand, within ABZR88_RS06655at 1635.336 kb on - strand, within ABZR88_RS06655at 1635.342 kb on + strand, within ABZR88_RS06655at 1635.379 kb on - strand, within ABZR88_RS06655at 1635.393 kb on + strand, within ABZR88_RS06655at 1635.525 kb on + strandat 1635.526 kb on - strandat 1635.575 kb on + strandat 1635.643 kb on - strand, within ABZR88_RS06660at 1635.643 kb on - strand, within ABZR88_RS06660at 1635.643 kb on - strand, within ABZR88_RS06660at 1635.751 kb on + strand, within ABZR88_RS06660at 1635.780 kb on + strandat 1635.795 kb on - strandat 1635.795 kb on - strandat 1635.891 kb on - strandat 1635.959 kb on + strandat 1636.164 kb on - strand, within ABZR88_RS06665at 1636.283 kb on + strand, within ABZR88_RS06665at 1636.386 kb on + strand, within ABZR88_RS06665at 1636.410 kb on - strand, within ABZR88_RS06665at 1636.417 kb on + strand, within ABZR88_RS06665at 1636.418 kb on - strand, within ABZR88_RS06665at 1636.485 kb on - strand, within ABZR88_RS06665at 1636.552 kb on - strand, within ABZR88_RS06665at 1636.561 kb on - strand, within ABZR88_RS06665at 1636.561 kb on - strand, within ABZR88_RS06665at 1636.649 kb on + strand, within ABZR88_RS06665at 1636.650 kb on - strand, within ABZR88_RS06665at 1636.690 kb on + strand, within ABZR88_RS06665at 1636.695 kb on + strand, within ABZR88_RS06665at 1636.748 kb on + strand, within ABZR88_RS06665

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride stress 1 mM
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1,634,598 - +0.2
1,634,719 - +0.1
1,634,740 - -0.3
1,634,837 + -0.1
1,634,837 + -0.1
1,634,888 - ABZR88_RS06655 0.17 +0.2
1,634,908 + ABZR88_RS06655 0.19 +0.0
1,634,909 - ABZR88_RS06655 0.19 -0.4
1,634,940 - ABZR88_RS06655 0.24 +0.1
1,634,960 + ABZR88_RS06655 0.26 +0.1
1,634,983 + ABZR88_RS06655 0.29 -0.2
1,635,102 - ABZR88_RS06655 0.45 -0.1
1,635,336 - ABZR88_RS06655 0.76 -0.3
1,635,342 + ABZR88_RS06655 0.77 -0.3
1,635,379 - ABZR88_RS06655 0.82 -0.9
1,635,393 + ABZR88_RS06655 0.84 +0.5
1,635,525 + +0.2
1,635,526 - +0.1
1,635,575 + -0.4
1,635,643 - ABZR88_RS06660 0.33 -0.2
1,635,643 - ABZR88_RS06660 0.33 -0.5
1,635,643 - ABZR88_RS06660 0.33 -0.0
1,635,751 + ABZR88_RS06660 0.88 +0.4
1,635,780 + +0.2
1,635,795 - -0.2
1,635,795 - +0.1
1,635,891 - -0.3
1,635,959 + +0.1
1,636,164 - ABZR88_RS06665 0.22 -0.2
1,636,283 + ABZR88_RS06665 0.30 -2.0
1,636,386 + ABZR88_RS06665 0.37 +0.2
1,636,410 - ABZR88_RS06665 0.39 -0.1
1,636,417 + ABZR88_RS06665 0.39 +0.1
1,636,418 - ABZR88_RS06665 0.39 -0.0
1,636,485 - ABZR88_RS06665 0.44 +0.0
1,636,552 - ABZR88_RS06665 0.48 +0.6
1,636,561 - ABZR88_RS06665 0.49 -0.1
1,636,561 - ABZR88_RS06665 0.49 -0.1
1,636,649 + ABZR88_RS06665 0.55 -0.2
1,636,650 - ABZR88_RS06665 0.55 -0.1
1,636,690 + ABZR88_RS06665 0.58 -0.5
1,636,695 + ABZR88_RS06665 0.58 +0.0
1,636,748 + ABZR88_RS06665 0.62 +0.4

Or see this region's nucleotide sequence