Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS18565

Experiment: NaCl stress 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS18560 and ABZR88_RS18565 are separated by 904 nucleotidesABZR88_RS18565 and ABZR88_RS18570 are separated by 105 nucleotides ABZR88_RS18560: ABZR88_RS18560 - gliding motility-associated C-terminal domain-containing protein, at 4,528,696 to 4,537,362 _RS18560 ABZR88_RS18565: ABZR88_RS18565 - hypothetical protein, at 4,538,267 to 4,538,524 _RS18565 ABZR88_RS18570: ABZR88_RS18570 - hypothetical protein, at 4,538,630 to 4,541,083 _RS18570 Position (kb) 4538 4539Strain fitness (log2 ratio) -1 0 1at 4537.309 kb on - strandat 4537.387 kb on - strandat 4537.432 kb on + strandat 4537.662 kb on + strandat 4537.838 kb on - strandat 4537.954 kb on - strandat 4537.967 kb on - strandat 4537.983 kb on - strandat 4538.091 kb on - strandat 4538.165 kb on - strandat 4538.212 kb on + strandat 4538.253 kb on + strandat 4538.283 kb on + strandat 4538.381 kb on + strand, within ABZR88_RS18565at 4538.478 kb on + strand, within ABZR88_RS18565at 4538.478 kb on + strand, within ABZR88_RS18565at 4538.520 kb on + strandat 4538.526 kb on - strandat 4538.530 kb on - strandat 4538.530 kb on - strandat 4538.610 kb on + strandat 4538.682 kb on + strandat 4538.737 kb on + strandat 4538.738 kb on - strandat 4538.738 kb on - strandat 4538.738 kb on - strandat 4538.965 kb on - strand, within ABZR88_RS18570at 4539.078 kb on + strand, within ABZR88_RS18570at 4539.078 kb on + strand, within ABZR88_RS18570at 4539.092 kb on - strand, within ABZR88_RS18570at 4539.092 kb on - strand, within ABZR88_RS18570

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Per-strain Table

Position Strand Gene LocusTag Fraction NaCl stress 100 mM
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4,537,309 - -0.5
4,537,387 - +0.1
4,537,432 + +0.2
4,537,662 + +0.1
4,537,838 - +0.1
4,537,954 - +0.0
4,537,967 - +0.2
4,537,983 - +0.1
4,538,091 - +0.3
4,538,165 - +0.5
4,538,212 + +0.7
4,538,253 + +0.3
4,538,283 + -0.8
4,538,381 + ABZR88_RS18565 0.44 -0.1
4,538,478 + ABZR88_RS18565 0.82 +0.3
4,538,478 + ABZR88_RS18565 0.82 +0.7
4,538,520 + -0.1
4,538,526 - +0.3
4,538,530 - +0.2
4,538,530 - -0.1
4,538,610 + +0.0
4,538,682 + -0.5
4,538,737 + +0.0
4,538,738 - +0.0
4,538,738 - +0.1
4,538,738 - +0.2
4,538,965 - ABZR88_RS18570 0.14 -0.1
4,539,078 + ABZR88_RS18570 0.18 +0.2
4,539,078 + ABZR88_RS18570 0.18 +0.1
4,539,092 - ABZR88_RS18570 0.19 +0.6
4,539,092 - ABZR88_RS18570 0.19 +0.4

Or see this region's nucleotide sequence