Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS07590

Experiment: R2A_high_K2HPO4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS07580 and ABZR88_RS07585 are separated by 154 nucleotidesABZR88_RS07585 and ABZR88_RS07590 are separated by 146 nucleotidesABZR88_RS07590 and ABZR88_RS07595 are separated by 103 nucleotides ABZR88_RS07580: ABZR88_RS07580 - outer membrane protein assembly factor, at 1,898,220 to 1,900,784 _RS07580 ABZR88_RS07585: ABZR88_RS07585 - hypothetical protein, at 1,900,939 to 1,901,082 _RS07585 ABZR88_RS07590: ABZR88_RS07590 - PD40 domain-containing protein, at 1,901,229 to 1,902,602 _RS07590 ABZR88_RS07595: ABZR88_RS07595 - PAS domain S-box protein, at 1,902,706 to 1,904,697 _RS07595 Position (kb) 1901 1902 1903Strain fitness (log2 ratio) -1 0 1at 1900.403 kb on + strand, within ABZR88_RS07580at 1900.403 kb on + strand, within ABZR88_RS07580at 1900.464 kb on + strand, within ABZR88_RS07580at 1900.583 kb on + strandat 1900.650 kb on - strandat 1900.656 kb on + strandat 1901.013 kb on + strand, within ABZR88_RS07585at 1901.158 kb on + strandat 1901.163 kb on - strandat 1901.302 kb on + strandat 1901.302 kb on + strandat 1901.358 kb on - strandat 1901.402 kb on - strand, within ABZR88_RS07590at 1901.404 kb on - strand, within ABZR88_RS07590at 1901.575 kb on - strand, within ABZR88_RS07590at 1901.583 kb on + strand, within ABZR88_RS07590at 1901.671 kb on + strand, within ABZR88_RS07590at 1901.748 kb on - strand, within ABZR88_RS07590at 1901.773 kb on + strand, within ABZR88_RS07590at 1901.773 kb on + strand, within ABZR88_RS07590at 1901.899 kb on + strand, within ABZR88_RS07590at 1901.934 kb on + strand, within ABZR88_RS07590at 1901.934 kb on + strand, within ABZR88_RS07590at 1901.935 kb on - strand, within ABZR88_RS07590at 1901.948 kb on - strand, within ABZR88_RS07590at 1902.121 kb on + strand, within ABZR88_RS07590at 1902.458 kb on + strand, within ABZR88_RS07590at 1902.627 kb on + strandat 1902.817 kb on - strandat 1902.949 kb on - strand, within ABZR88_RS07595at 1903.024 kb on - strand, within ABZR88_RS07595at 1903.068 kb on + strand, within ABZR88_RS07595at 1903.523 kb on - strand, within ABZR88_RS07595

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_high_K2HPO4
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1,900,403 + ABZR88_RS07580 0.85 -0.1
1,900,403 + ABZR88_RS07580 0.85 +0.0
1,900,464 + ABZR88_RS07580 0.87 +0.1
1,900,583 + +0.0
1,900,650 - -0.1
1,900,656 + +0.3
1,901,013 + ABZR88_RS07585 0.51 +0.2
1,901,158 + +0.3
1,901,163 - +0.7
1,901,302 + -0.3
1,901,302 + +0.0
1,901,358 - -0.4
1,901,402 - ABZR88_RS07590 0.13 +1.2
1,901,404 - ABZR88_RS07590 0.13 -0.5
1,901,575 - ABZR88_RS07590 0.25 +0.1
1,901,583 + ABZR88_RS07590 0.26 +0.0
1,901,671 + ABZR88_RS07590 0.32 -0.6
1,901,748 - ABZR88_RS07590 0.38 +0.1
1,901,773 + ABZR88_RS07590 0.40 -0.1
1,901,773 + ABZR88_RS07590 0.40 +0.2
1,901,899 + ABZR88_RS07590 0.49 -1.7
1,901,934 + ABZR88_RS07590 0.51 -1.3
1,901,934 + ABZR88_RS07590 0.51 +0.3
1,901,935 - ABZR88_RS07590 0.51 +0.3
1,901,948 - ABZR88_RS07590 0.52 +0.0
1,902,121 + ABZR88_RS07590 0.65 +0.2
1,902,458 + ABZR88_RS07590 0.89 -0.1
1,902,627 + -0.0
1,902,817 - -0.1
1,902,949 - ABZR88_RS07595 0.12 +0.1
1,903,024 - ABZR88_RS07595 0.16 -0.2
1,903,068 + ABZR88_RS07595 0.18 +0.0
1,903,523 - ABZR88_RS07595 0.41 -0.1

Or see this region's nucleotide sequence