Experiment: R2A_high_K2HPO4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS07580 and ABZR88_RS07585 are separated by 154 nucleotides ABZR88_RS07585 and ABZR88_RS07590 are separated by 146 nucleotides ABZR88_RS07590 and ABZR88_RS07595 are separated by 103 nucleotides
ABZR88_RS07580: ABZR88_RS07580 - outer membrane protein assembly factor, at 1,898,220 to 1,900,784
_RS07580
ABZR88_RS07585: ABZR88_RS07585 - hypothetical protein, at 1,900,939 to 1,901,082
_RS07585
ABZR88_RS07590: ABZR88_RS07590 - PD40 domain-containing protein, at 1,901,229 to 1,902,602
_RS07590
ABZR88_RS07595: ABZR88_RS07595 - PAS domain S-box protein, at 1,902,706 to 1,904,697
_RS07595
Position (kb)
1901
1902
1903 Strain fitness (log2 ratio)
-1
0
1 at 1900.403 kb on + strand, within ABZR88_RS07580 at 1900.403 kb on + strand, within ABZR88_RS07580 at 1900.464 kb on + strand, within ABZR88_RS07580 at 1900.583 kb on + strand at 1900.650 kb on - strand at 1900.656 kb on + strand at 1901.013 kb on + strand, within ABZR88_RS07585 at 1901.158 kb on + strand at 1901.163 kb on - strand at 1901.302 kb on + strand at 1901.302 kb on + strand at 1901.358 kb on - strand at 1901.402 kb on - strand, within ABZR88_RS07590 at 1901.404 kb on - strand, within ABZR88_RS07590 at 1901.575 kb on - strand, within ABZR88_RS07590 at 1901.583 kb on + strand, within ABZR88_RS07590 at 1901.671 kb on + strand, within ABZR88_RS07590 at 1901.748 kb on - strand, within ABZR88_RS07590 at 1901.773 kb on + strand, within ABZR88_RS07590 at 1901.773 kb on + strand, within ABZR88_RS07590 at 1901.899 kb on + strand, within ABZR88_RS07590 at 1901.934 kb on + strand, within ABZR88_RS07590 at 1901.934 kb on + strand, within ABZR88_RS07590 at 1901.935 kb on - strand, within ABZR88_RS07590 at 1901.948 kb on - strand, within ABZR88_RS07590 at 1902.121 kb on + strand, within ABZR88_RS07590 at 1902.458 kb on + strand, within ABZR88_RS07590 at 1902.627 kb on + strand at 1902.817 kb on - strand at 1902.949 kb on - strand, within ABZR88_RS07595 at 1903.024 kb on - strand, within ABZR88_RS07595 at 1903.068 kb on + strand, within ABZR88_RS07595 at 1903.523 kb on - strand, within ABZR88_RS07595
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_high_K2HPO4 remove 1,900,403 + ABZR88_RS07580 0.85 -0.1 1,900,403 + ABZR88_RS07580 0.85 +0.0 1,900,464 + ABZR88_RS07580 0.87 +0.1 1,900,583 + +0.0 1,900,650 - -0.1 1,900,656 + +0.3 1,901,013 + ABZR88_RS07585 0.51 +0.2 1,901,158 + +0.3 1,901,163 - +0.7 1,901,302 + -0.3 1,901,302 + +0.0 1,901,358 - -0.4 1,901,402 - ABZR88_RS07590 0.13 +1.2 1,901,404 - ABZR88_RS07590 0.13 -0.5 1,901,575 - ABZR88_RS07590 0.25 +0.1 1,901,583 + ABZR88_RS07590 0.26 +0.0 1,901,671 + ABZR88_RS07590 0.32 -0.6 1,901,748 - ABZR88_RS07590 0.38 +0.1 1,901,773 + ABZR88_RS07590 0.40 -0.1 1,901,773 + ABZR88_RS07590 0.40 +0.2 1,901,899 + ABZR88_RS07590 0.49 -1.7 1,901,934 + ABZR88_RS07590 0.51 -1.3 1,901,934 + ABZR88_RS07590 0.51 +0.3 1,901,935 - ABZR88_RS07590 0.51 +0.3 1,901,948 - ABZR88_RS07590 0.52 +0.0 1,902,121 + ABZR88_RS07590 0.65 +0.2 1,902,458 + ABZR88_RS07590 0.89 -0.1 1,902,627 + -0.0 1,902,817 - -0.1 1,902,949 - ABZR88_RS07595 0.12 +0.1 1,903,024 - ABZR88_RS07595 0.16 -0.2 1,903,068 + ABZR88_RS07595 0.18 +0.0 1,903,523 - ABZR88_RS07595 0.41 -0.1
Or see this region's nucleotide sequence