Experiment: NL-CCM; spin-x control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03980 and MPMX19_03981 are separated by 49 nucleotides MPMX19_03981 and MPMX19_03982 are separated by 282 nucleotides MPMX19_03982 and MPMX19_03983 are separated by 394 nucleotides
MPMX19_03980: MPMX19_03980 - Sensor protein FixL, at 271,353 to 273,155
_03980
MPMX19_03981: MPMX19_03981 - hypothetical protein, at 273,205 to 273,441
_03981
MPMX19_03982: MPMX19_03982 - tRNA-Ser, at 273,724 to 273,816
_03982
MPMX19_03983: MPMX19_03983 - hypothetical protein, at 274,211 to 274,669
_03983
Position (kb) 273
274 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 272.790 kb on + strand, within MPMX19_03980 at 272.790 kb on + strand, within MPMX19_03980 at 272.790 kb on + strand, within MPMX19_03980 at 272.791 kb on - strand, within MPMX19_03980 at 272.791 kb on - strand, within MPMX19_03980 at 272.791 kb on - strand, within MPMX19_03980 at 273.539 kb on + strand at 273.540 kb on - strand at 273.540 kb on - strand at 273.540 kb on - strand at 273.559 kb on + strand at 273.559 kb on + strand at 273.559 kb on + strand at 273.559 kb on + strand at 273.559 kb on + strand at 273.559 kb on + strand at 273.559 kb on + strand at 273.560 kb on - strand at 273.560 kb on - strand at 273.560 kb on - strand at 273.560 kb on - strand at 273.560 kb on - strand at 273.560 kb on - strand at 273.560 kb on - strand at 273.560 kb on - strand at 273.560 kb on - strand at 273.560 kb on - strand at 273.647 kb on + strand at 273.647 kb on + strand at 273.856 kb on - strand at 273.856 kb on - strand at 273.898 kb on + strand at 273.898 kb on + strand at 273.898 kb on + strand at 273.899 kb on - strand at 273.974 kb on + strand at 273.974 kb on + strand at 273.974 kb on + strand at 273.974 kb on + strand at 273.974 kb on + strand at 273.975 kb on - strand at 273.995 kb on + strand at 273.995 kb on + strand at 273.995 kb on + strand at 273.995 kb on + strand at 274.027 kb on + strand at 274.027 kb on + strand at 274.027 kb on + strand at 274.027 kb on + strand at 274.027 kb on + strand at 274.028 kb on - strand at 274.028 kb on - strand at 274.028 kb on - strand at 274.028 kb on - strand at 274.028 kb on - strand at 274.028 kb on - strand at 274.082 kb on + strand at 274.082 kb on + strand at 274.082 kb on + strand at 274.082 kb on + strand at 274.083 kb on - strand at 274.083 kb on - strand at 274.083 kb on - strand at 274.083 kb on - strand at 274.201 kb on - strand at 274.337 kb on + strand, within MPMX19_03983 at 274.337 kb on + strand, within MPMX19_03983 at 274.337 kb on + strand, within MPMX19_03983 at 274.337 kb on + strand, within MPMX19_03983 at 274.337 kb on + strand, within MPMX19_03983 at 274.337 kb on + strand, within MPMX19_03983 at 274.337 kb on + strand, within MPMX19_03983 at 274.337 kb on + strand, within MPMX19_03983 at 274.338 kb on - strand, within MPMX19_03983 at 274.338 kb on - strand, within MPMX19_03983 at 274.338 kb on - strand, within MPMX19_03983 at 274.338 kb on - strand, within MPMX19_03983 at 274.338 kb on - strand, within MPMX19_03983 at 274.338 kb on - strand, within MPMX19_03983 at 274.338 kb on - strand, within MPMX19_03983 at 274.360 kb on + strand, within MPMX19_03983 at 274.360 kb on + strand, within MPMX19_03983 at 274.360 kb on + strand, within MPMX19_03983 at 274.360 kb on + strand, within MPMX19_03983 at 274.360 kb on + strand, within MPMX19_03983 at 274.360 kb on + strand, within MPMX19_03983 at 274.360 kb on + strand, within MPMX19_03983 at 274.360 kb on + strand, within MPMX19_03983 at 274.360 kb on + strand, within MPMX19_03983 at 274.360 kb on + strand, within MPMX19_03983 at 274.361 kb on - strand, within MPMX19_03983 at 274.361 kb on - strand, within MPMX19_03983 at 274.361 kb on - strand, within MPMX19_03983 at 274.361 kb on - strand, within MPMX19_03983 at 274.361 kb on - strand, within MPMX19_03983 at 274.361 kb on - strand, within MPMX19_03983 at 274.361 kb on - strand, within MPMX19_03983 at 274.407 kb on + strand, within MPMX19_03983 at 274.407 kb on + strand, within MPMX19_03983 at 274.408 kb on - strand, within MPMX19_03983 at 274.408 kb on - strand, within MPMX19_03983 at 274.416 kb on + strand, within MPMX19_03983 at 274.431 kb on + strand, within MPMX19_03983 at 274.431 kb on + strand, within MPMX19_03983 at 274.431 kb on + strand, within MPMX19_03983 at 274.431 kb on + strand, within MPMX19_03983 at 274.431 kb on + strand, within MPMX19_03983 at 274.431 kb on + strand, within MPMX19_03983 at 274.431 kb on + strand, within MPMX19_03983 at 274.432 kb on - strand, within MPMX19_03983 at 274.432 kb on - strand, within MPMX19_03983 at 274.432 kb on - strand, within MPMX19_03983 at 274.432 kb on - strand, within MPMX19_03983 at 274.432 kb on - strand, within MPMX19_03983 at 274.432 kb on - strand, within MPMX19_03983 at 274.432 kb on - strand, within MPMX19_03983 at 274.432 kb on - strand, within MPMX19_03983 at 274.432 kb on - strand, within MPMX19_03983 at 274.432 kb on - strand, within MPMX19_03983 at 274.461 kb on + strand, within MPMX19_03983 at 274.461 kb on + strand, within MPMX19_03983 at 274.461 kb on + strand, within MPMX19_03983 at 274.461 kb on + strand, within MPMX19_03983 at 274.462 kb on - strand, within MPMX19_03983 at 274.462 kb on - strand, within MPMX19_03983 at 274.462 kb on - strand, within MPMX19_03983 at 274.490 kb on + strand, within MPMX19_03983 at 274.490 kb on + strand, within MPMX19_03983 at 274.490 kb on + strand, within MPMX19_03983 at 274.490 kb on + strand, within MPMX19_03983 at 274.490 kb on + strand, within MPMX19_03983 at 274.490 kb on + strand, within MPMX19_03983 at 274.491 kb on - strand, within MPMX19_03983 at 274.491 kb on - strand, within MPMX19_03983 at 274.491 kb on - strand, within MPMX19_03983 at 274.491 kb on - strand, within MPMX19_03983 at 274.491 kb on - strand, within MPMX19_03983 at 274.491 kb on - strand, within MPMX19_03983 at 274.547 kb on - strand, within MPMX19_03983 at 274.547 kb on - strand, within MPMX19_03983 at 274.586 kb on + strand, within MPMX19_03983 at 274.586 kb on + strand, within MPMX19_03983 at 274.586 kb on + strand, within MPMX19_03983 at 274.586 kb on + strand, within MPMX19_03983 at 274.586 kb on + strand, within MPMX19_03983 at 274.586 kb on + strand, within MPMX19_03983 at 274.586 kb on + strand, within MPMX19_03983 at 274.586 kb on + strand, within MPMX19_03983 at 274.586 kb on + strand, within MPMX19_03983 at 274.586 kb on + strand, within MPMX19_03983 at 274.586 kb on + strand, within MPMX19_03983 at 274.586 kb on + strand, within MPMX19_03983 at 274.586 kb on + strand, within MPMX19_03983 at 274.586 kb on + strand, within MPMX19_03983 at 274.587 kb on - strand, within MPMX19_03983 at 274.587 kb on - strand, within MPMX19_03983 at 274.587 kb on - strand, within MPMX19_03983 at 274.587 kb on - strand, within MPMX19_03983 at 274.587 kb on - strand, within MPMX19_03983 at 274.587 kb on - strand, within MPMX19_03983 at 274.587 kb on - strand, within MPMX19_03983 at 274.587 kb on - strand, within MPMX19_03983 at 274.588 kb on + strand, within MPMX19_03983 at 274.588 kb on + strand, within MPMX19_03983 at 274.588 kb on + strand, within MPMX19_03983 at 274.588 kb on + strand, within MPMX19_03983 at 274.588 kb on + strand, within MPMX19_03983 at 274.588 kb on + strand, within MPMX19_03983 at 274.588 kb on + strand, within MPMX19_03983 at 274.588 kb on + strand, within MPMX19_03983 at 274.588 kb on + strand, within MPMX19_03983 at 274.588 kb on + strand, within MPMX19_03983 at 274.588 kb on + strand, within MPMX19_03983 at 274.588 kb on + strand, within MPMX19_03983 at 274.588 kb on + strand, within MPMX19_03983 at 274.588 kb on + strand, within MPMX19_03983 at 274.588 kb on + strand, within MPMX19_03983 at 274.588 kb on + strand, within MPMX19_03983 at 274.588 kb on + strand, within MPMX19_03983 at 274.588 kb on + strand, within MPMX19_03983 at 274.588 kb on + strand, within MPMX19_03983 at 274.588 kb on + strand, within MPMX19_03983 at 274.588 kb on + strand, within MPMX19_03983 at 274.588 kb on + strand, within MPMX19_03983 at 274.588 kb on + strand, within MPMX19_03983 at 274.588 kb on + strand, within MPMX19_03983 at 274.588 kb on + strand, within MPMX19_03983 at 274.589 kb on - strand, within MPMX19_03983 at 274.589 kb on - strand, within MPMX19_03983 at 274.589 kb on - strand, within MPMX19_03983 at 274.589 kb on - strand, within MPMX19_03983 at 274.589 kb on - strand, within MPMX19_03983 at 274.589 kb on - strand, within MPMX19_03983 at 274.589 kb on - strand, within MPMX19_03983 at 274.589 kb on - strand, within MPMX19_03983 at 274.589 kb on - strand, within MPMX19_03983 at 274.589 kb on - strand, within MPMX19_03983 at 274.589 kb on - strand, within MPMX19_03983 at 274.589 kb on - strand, within MPMX19_03983 at 274.589 kb on - strand, within MPMX19_03983 at 274.589 kb on - strand, within MPMX19_03983 at 274.589 kb on - strand, within MPMX19_03983 at 274.589 kb on - strand, within MPMX19_03983 at 274.589 kb on - strand, within MPMX19_03983 at 274.589 kb on - strand, within MPMX19_03983 at 274.635 kb on + strand at 274.635 kb on + strand at 274.636 kb on - strand at 274.636 kb on - strand at 274.667 kb on + strand at 274.667 kb on + strand at 274.667 kb on + strand at 274.667 kb on + strand at 274.667 kb on + strand at 274.667 kb on + strand at 274.667 kb on + strand at 274.667 kb on + strand at 274.668 kb on - strand at 274.668 kb on - strand at 274.668 kb on - strand at 274.668 kb on - strand at 274.668 kb on - strand at 274.668 kb on - strand at 274.668 kb on - strand at 274.668 kb on - strand at 274.668 kb on - strand at 274.668 kb on - strand at 274.704 kb on + strand at 274.705 kb on - strand at 274.712 kb on + strand at 274.713 kb on - strand at 274.734 kb on + strand at 274.734 kb on + strand at 274.734 kb on + strand at 274.735 kb on - strand at 274.735 kb on - strand at 274.782 kb on - strand at 274.782 kb on - strand at 274.782 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; spin-x control remove 272,790 + MPMX19_03980 0.80 -1.6 272,790 + MPMX19_03980 0.80 -0.3 272,790 + MPMX19_03980 0.80 -0.2 272,791 - MPMX19_03980 0.80 -0.3 272,791 - MPMX19_03980 0.80 +0.7 272,791 - MPMX19_03980 0.80 -0.7 273,539 + -0.6 273,540 - +0.7 273,540 - +1.1 273,540 - -1.3 273,559 + +0.7 273,559 + +1.1 273,559 + -1.8 273,559 + -0.3 273,559 + +0.0 273,559 + -0.8 273,559 + +0.6 273,560 - -1.1 273,560 - -0.6 273,560 - -0.9 273,560 - -0.6 273,560 - -1.4 273,560 - -1.1 273,560 - -0.0 273,560 - +0.6 273,560 - -1.1 273,560 - +0.4 273,647 + -1.3 273,647 + -1.8 273,856 - +0.7 273,856 - -2.2 273,898 + +1.3 273,898 + +0.7 273,898 + -0.4 273,899 - -1.2 273,974 + +1.2 273,974 + -1.2 273,974 + -0.6 273,974 + +0.0 273,974 + -0.6 273,975 - -0.4 273,995 + -0.3 273,995 + -0.8 273,995 + -1.3 273,995 + +0.0 274,027 + -1.6 274,027 + -2.1 274,027 + +0.4 274,027 + -1.3 274,027 + -2.4 274,028 - -1.6 274,028 - +0.8 274,028 - -0.4 274,028 - -0.7 274,028 - -0.0 274,028 - -0.2 274,082 + -1.0 274,082 + -1.4 274,082 + +0.4 274,082 + +0.3 274,083 - -0.2 274,083 - -1.1 274,083 - -1.2 274,083 - +0.4 274,201 - -0.2 274,337 + MPMX19_03983 0.27 +0.1 274,337 + MPMX19_03983 0.27 -1.6 274,337 + MPMX19_03983 0.27 +0.0 274,337 + MPMX19_03983 0.27 +0.0 274,337 + MPMX19_03983 0.27 -0.2 274,337 + MPMX19_03983 0.27 +0.4 274,337 + MPMX19_03983 0.27 +0.6 274,337 + MPMX19_03983 0.27 -0.3 274,338 - MPMX19_03983 0.28 -1.6 274,338 - MPMX19_03983 0.28 -1.3 274,338 - MPMX19_03983 0.28 -1.4 274,338 - MPMX19_03983 0.28 -1.4 274,338 - MPMX19_03983 0.28 -1.2 274,338 - MPMX19_03983 0.28 +0.2 274,338 - MPMX19_03983 0.28 +0.1 274,360 + MPMX19_03983 0.32 +0.7 274,360 + MPMX19_03983 0.32 -0.2 274,360 + MPMX19_03983 0.32 -1.4 274,360 + MPMX19_03983 0.32 -1.4 274,360 + MPMX19_03983 0.32 +0.1 274,360 + MPMX19_03983 0.32 -0.3 274,360 + MPMX19_03983 0.32 -0.3 274,360 + MPMX19_03983 0.32 +0.2 274,360 + MPMX19_03983 0.32 -0.6 274,360 + MPMX19_03983 0.32 -0.4 274,361 - MPMX19_03983 0.33 -0.1 274,361 - MPMX19_03983 0.33 -0.2 274,361 - MPMX19_03983 0.33 -0.8 274,361 - MPMX19_03983 0.33 -0.6 274,361 - MPMX19_03983 0.33 -0.1 274,361 - MPMX19_03983 0.33 -0.1 274,361 - MPMX19_03983 0.33 -0.1 274,407 + MPMX19_03983 0.43 -2.1 274,407 + MPMX19_03983 0.43 -1.5 274,408 - MPMX19_03983 0.43 +0.6 274,408 - MPMX19_03983 0.43 -0.6 274,416 + MPMX19_03983 0.45 -0.2 274,431 + MPMX19_03983 0.48 +0.8 274,431 + MPMX19_03983 0.48 +0.3 274,431 + MPMX19_03983 0.48 -2.4 274,431 + MPMX19_03983 0.48 -0.1 274,431 + MPMX19_03983 0.48 -0.6 274,431 + MPMX19_03983 0.48 +0.4 274,431 + MPMX19_03983 0.48 -0.3 274,432 - MPMX19_03983 0.48 +0.4 274,432 - MPMX19_03983 0.48 -1.8 274,432 - MPMX19_03983 0.48 +0.2 274,432 - MPMX19_03983 0.48 -2.0 274,432 - MPMX19_03983 0.48 -2.5 274,432 - MPMX19_03983 0.48 -0.6 274,432 - MPMX19_03983 0.48 -0.3 274,432 - MPMX19_03983 0.48 -0.8 274,432 - MPMX19_03983 0.48 +1.7 274,432 - MPMX19_03983 0.48 -0.0 274,461 + MPMX19_03983 0.54 -0.5 274,461 + MPMX19_03983 0.54 -0.9 274,461 + MPMX19_03983 0.54 -0.2 274,461 + MPMX19_03983 0.54 -1.1 274,462 - MPMX19_03983 0.55 +1.0 274,462 - MPMX19_03983 0.55 -0.5 274,462 - MPMX19_03983 0.55 -0.1 274,490 + MPMX19_03983 0.61 -0.1 274,490 + MPMX19_03983 0.61 -1.1 274,490 + MPMX19_03983 0.61 -0.2 274,490 + MPMX19_03983 0.61 -0.9 274,490 + MPMX19_03983 0.61 -0.2 274,490 + MPMX19_03983 0.61 -0.4 274,491 - MPMX19_03983 0.61 +0.2 274,491 - MPMX19_03983 0.61 -0.2 274,491 - MPMX19_03983 0.61 +1.1 274,491 - MPMX19_03983 0.61 -0.2 274,491 - MPMX19_03983 0.61 -0.4 274,491 - MPMX19_03983 0.61 -0.3 274,547 - MPMX19_03983 0.73 +0.6 274,547 - MPMX19_03983 0.73 -0.4 274,586 + MPMX19_03983 0.82 -0.4 274,586 + MPMX19_03983 0.82 +0.1 274,586 + MPMX19_03983 0.82 -0.7 274,586 + MPMX19_03983 0.82 +1.0 274,586 + MPMX19_03983 0.82 +0.4 274,586 + MPMX19_03983 0.82 -0.3 274,586 + MPMX19_03983 0.82 -0.5 274,586 + MPMX19_03983 0.82 -0.9 274,586 + MPMX19_03983 0.82 -2.7 274,586 + MPMX19_03983 0.82 -2.2 274,586 + MPMX19_03983 0.82 +0.1 274,586 + MPMX19_03983 0.82 -1.2 274,586 + MPMX19_03983 0.82 +1.1 274,586 + MPMX19_03983 0.82 -1.1 274,587 - MPMX19_03983 0.82 -0.3 274,587 - MPMX19_03983 0.82 -0.2 274,587 - MPMX19_03983 0.82 -0.2 274,587 - MPMX19_03983 0.82 +1.8 274,587 - MPMX19_03983 0.82 +0.1 274,587 - MPMX19_03983 0.82 -1.0 274,587 - MPMX19_03983 0.82 -1.4 274,587 - MPMX19_03983 0.82 -0.6 274,588 + MPMX19_03983 0.82 -3.1 274,588 + MPMX19_03983 0.82 +0.4 274,588 + MPMX19_03983 0.82 -0.8 274,588 + MPMX19_03983 0.82 -0.7 274,588 + MPMX19_03983 0.82 -0.5 274,588 + MPMX19_03983 0.82 -0.0 274,588 + MPMX19_03983 0.82 -1.6 274,588 + MPMX19_03983 0.82 +1.9 274,588 + MPMX19_03983 0.82 +0.6 274,588 + MPMX19_03983 0.82 -0.2 274,588 + MPMX19_03983 0.82 -0.2 274,588 + MPMX19_03983 0.82 -0.3 274,588 + MPMX19_03983 0.82 -0.6 274,588 + MPMX19_03983 0.82 -2.8 274,588 + MPMX19_03983 0.82 -0.8 274,588 + MPMX19_03983 0.82 -0.7 274,588 + MPMX19_03983 0.82 +0.4 274,588 + MPMX19_03983 0.82 +0.1 274,588 + MPMX19_03983 0.82 +0.4 274,588 + MPMX19_03983 0.82 +0.4 274,588 + MPMX19_03983 0.82 +0.4 274,588 + MPMX19_03983 0.82 +1.4 274,588 + MPMX19_03983 0.82 -1.8 274,588 + MPMX19_03983 0.82 -0.4 274,588 + MPMX19_03983 0.82 -0.9 274,589 - MPMX19_03983 0.82 -2.2 274,589 - MPMX19_03983 0.82 -0.9 274,589 - MPMX19_03983 0.82 -0.1 274,589 - MPMX19_03983 0.82 +0.0 274,589 - MPMX19_03983 0.82 -1.9 274,589 - MPMX19_03983 0.82 +0.7 274,589 - MPMX19_03983 0.82 -1.3 274,589 - MPMX19_03983 0.82 -0.0 274,589 - MPMX19_03983 0.82 -0.4 274,589 - MPMX19_03983 0.82 -0.9 274,589 - MPMX19_03983 0.82 -0.0 274,589 - MPMX19_03983 0.82 -0.0 274,589 - MPMX19_03983 0.82 +1.6 274,589 - MPMX19_03983 0.82 +0.2 274,589 - MPMX19_03983 0.82 -1.4 274,589 - MPMX19_03983 0.82 -0.8 274,589 - MPMX19_03983 0.82 +0.7 274,589 - MPMX19_03983 0.82 +0.1 274,635 + -0.9 274,635 + -0.1 274,636 - +2.4 274,636 - -0.0 274,667 + -0.1 274,667 + -0.9 274,667 + +0.1 274,667 + +0.7 274,667 + +0.6 274,667 + -1.2 274,667 + +2.7 274,667 + -1.8 274,668 - -0.5 274,668 - +1.7 274,668 - -1.4 274,668 - -2.6 274,668 - -0.2 274,668 - -1.6 274,668 - -0.5 274,668 - -1.7 274,668 - -0.9 274,668 - -0.9 274,704 + +1.4 274,705 - +0.1 274,712 + -1.4 274,713 - -0.7 274,734 + -1.4 274,734 + +0.4 274,734 + +0.3 274,735 - +1.4 274,735 - -0.5 274,782 - +0.4 274,782 - -1.2 274,782 - -0.7
Or see this region's nucleotide sequence