Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02898

Experiment: NL-CCM; spin-x control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02897 and MPMX19_02898 overlap by 14 nucleotidesMPMX19_02898 and MPMX19_02899 are separated by 505 nucleotides MPMX19_02897: MPMX19_02897 - hypothetical protein, at 151,836 to 152,960 _02897 MPMX19_02898: MPMX19_02898 - hypothetical protein, at 152,947 to 154,317 _02898 MPMX19_02899: MPMX19_02899 - hypothetical protein, at 154,823 to 155,476 _02899 Position (kb) 152 153 154 155Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 152.212 kb on + strand, within MPMX19_02897at 152.212 kb on + strand, within MPMX19_02897at 152.212 kb on + strand, within MPMX19_02897at 152.212 kb on + strand, within MPMX19_02897at 152.212 kb on + strand, within MPMX19_02897at 152.212 kb on + strand, within MPMX19_02897at 152.212 kb on + strand, within MPMX19_02897at 152.212 kb on + strand, within MPMX19_02897at 152.212 kb on + strand, within MPMX19_02897at 152.212 kb on + strand, within MPMX19_02897at 152.213 kb on - strand, within MPMX19_02897at 152.213 kb on - strand, within MPMX19_02897at 152.213 kb on - strand, within MPMX19_02897at 152.213 kb on - strand, within MPMX19_02897at 152.257 kb on + strand, within MPMX19_02897at 152.258 kb on - strand, within MPMX19_02897at 152.466 kb on + strand, within MPMX19_02897at 152.466 kb on + strand, within MPMX19_02897at 152.466 kb on + strand, within MPMX19_02897at 152.466 kb on + strand, within MPMX19_02897at 152.466 kb on + strand, within MPMX19_02897at 152.466 kb on + strand, within MPMX19_02897at 152.466 kb on + strand, within MPMX19_02897at 152.467 kb on - strand, within MPMX19_02897at 152.467 kb on - strand, within MPMX19_02897at 152.467 kb on - strand, within MPMX19_02897at 152.467 kb on - strand, within MPMX19_02897at 152.467 kb on - strand, within MPMX19_02897at 152.467 kb on - strand, within MPMX19_02897at 152.518 kb on + strand, within MPMX19_02897at 152.519 kb on - strand, within MPMX19_02897at 152.696 kb on - strand, within MPMX19_02897at 152.761 kb on + strand, within MPMX19_02897at 152.761 kb on + strand, within MPMX19_02897at 152.761 kb on + strand, within MPMX19_02897at 152.762 kb on - strand, within MPMX19_02897at 152.776 kb on + strand, within MPMX19_02897at 152.872 kb on + strandat 152.873 kb on - strandat 152.873 kb on - strandat 152.873 kb on - strandat 152.943 kb on - strandat 152.943 kb on - strandat 153.030 kb on - strandat 153.030 kb on - strandat 153.030 kb on - strandat 153.030 kb on - strandat 153.030 kb on - strandat 153.591 kb on + strand, within MPMX19_02898at 153.591 kb on + strand, within MPMX19_02898at 153.591 kb on + strand, within MPMX19_02898at 153.591 kb on + strand, within MPMX19_02898at 153.591 kb on + strand, within MPMX19_02898at 153.591 kb on + strand, within MPMX19_02898at 153.592 kb on - strand, within MPMX19_02898at 153.592 kb on - strand, within MPMX19_02898at 153.852 kb on - strand, within MPMX19_02898at 153.868 kb on + strand, within MPMX19_02898at 153.887 kb on + strand, within MPMX19_02898at 153.887 kb on + strand, within MPMX19_02898at 153.887 kb on + strand, within MPMX19_02898at 153.887 kb on + strand, within MPMX19_02898at 153.887 kb on + strand, within MPMX19_02898at 153.887 kb on + strand, within MPMX19_02898at 153.887 kb on + strand, within MPMX19_02898at 153.887 kb on + strand, within MPMX19_02898at 153.888 kb on - strand, within MPMX19_02898at 153.888 kb on - strand, within MPMX19_02898at 153.944 kb on + strand, within MPMX19_02898at 153.944 kb on + strand, within MPMX19_02898at 153.945 kb on - strand, within MPMX19_02898at 154.026 kb on + strand, within MPMX19_02898at 154.060 kb on + strand, within MPMX19_02898at 154.060 kb on + strand, within MPMX19_02898at 154.060 kb on + strand, within MPMX19_02898at 154.061 kb on - strand, within MPMX19_02898at 154.098 kb on - strand, within MPMX19_02898at 154.098 kb on - strand, within MPMX19_02898at 154.112 kb on + strand, within MPMX19_02898at 154.112 kb on + strand, within MPMX19_02898at 154.112 kb on + strand, within MPMX19_02898at 154.197 kb on + strandat 154.197 kb on + strandat 154.197 kb on + strandat 154.198 kb on - strandat 154.198 kb on - strandat 154.198 kb on - strandat 154.198 kb on - strandat 154.383 kb on + strandat 154.453 kb on + strandat 154.453 kb on + strandat 154.453 kb on + strandat 154.453 kb on + strandat 154.453 kb on + strandat 154.453 kb on + strandat 154.453 kb on + strandat 154.453 kb on + strandat 154.454 kb on - strandat 154.454 kb on - strandat 154.454 kb on - strandat 154.454 kb on - strandat 154.454 kb on - strandat 154.454 kb on - strandat 154.493 kb on + strandat 154.494 kb on - strandat 154.494 kb on - strandat 154.610 kb on + strandat 154.610 kb on + strandat 154.611 kb on - strandat 154.874 kb on + strandat 154.874 kb on + strandat 154.874 kb on + strandat 154.874 kb on + strandat 154.874 kb on + strandat 154.874 kb on + strandat 154.874 kb on + strandat 154.874 kb on + strandat 154.874 kb on + strandat 154.874 kb on + strandat 154.875 kb on - strandat 154.875 kb on - strandat 154.875 kb on - strandat 154.875 kb on - strandat 154.875 kb on - strandat 154.875 kb on - strandat 154.875 kb on - strandat 154.875 kb on - strandat 154.875 kb on - strandat 154.875 kb on - strandat 154.937 kb on + strand, within MPMX19_02899at 154.937 kb on + strand, within MPMX19_02899at 154.937 kb on + strand, within MPMX19_02899at 154.937 kb on + strand, within MPMX19_02899at 154.937 kb on + strand, within MPMX19_02899at 154.937 kb on + strand, within MPMX19_02899at 154.937 kb on + strand, within MPMX19_02899at 154.937 kb on + strand, within MPMX19_02899at 154.937 kb on + strand, within MPMX19_02899at 154.938 kb on - strand, within MPMX19_02899at 154.938 kb on - strand, within MPMX19_02899at 154.938 kb on - strand, within MPMX19_02899at 154.938 kb on - strand, within MPMX19_02899at 154.938 kb on - strand, within MPMX19_02899at 154.938 kb on - strand, within MPMX19_02899at 154.938 kb on - strand, within MPMX19_02899at 154.938 kb on - strand, within MPMX19_02899at 155.032 kb on + strand, within MPMX19_02899at 155.032 kb on + strand, within MPMX19_02899at 155.032 kb on + strand, within MPMX19_02899at 155.032 kb on + strand, within MPMX19_02899at 155.033 kb on - strand, within MPMX19_02899at 155.033 kb on - strand, within MPMX19_02899at 155.033 kb on - strand, within MPMX19_02899at 155.033 kb on - strand, within MPMX19_02899at 155.033 kb on - strand, within MPMX19_02899at 155.033 kb on - strand, within MPMX19_02899at 155.033 kb on - strand, within MPMX19_02899at 155.195 kb on + strand, within MPMX19_02899at 155.195 kb on + strand, within MPMX19_02899at 155.196 kb on - strand, within MPMX19_02899at 155.196 kb on - strand, within MPMX19_02899at 155.196 kb on - strand, within MPMX19_02899at 155.196 kb on - strand, within MPMX19_02899

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; spin-x control
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152,212 + MPMX19_02897 0.33 -0.8
152,212 + MPMX19_02897 0.33 +0.2
152,212 + MPMX19_02897 0.33 +0.4
152,212 + MPMX19_02897 0.33 -0.9
152,212 + MPMX19_02897 0.33 +0.1
152,212 + MPMX19_02897 0.33 +0.8
152,212 + MPMX19_02897 0.33 +0.7
152,212 + MPMX19_02897 0.33 -1.1
152,212 + MPMX19_02897 0.33 -2.4
152,212 + MPMX19_02897 0.33 +0.9
152,213 - MPMX19_02897 0.34 -2.2
152,213 - MPMX19_02897 0.34 -2.2
152,213 - MPMX19_02897 0.34 -2.2
152,213 - MPMX19_02897 0.34 -1.0
152,257 + MPMX19_02897 0.37 +1.9
152,258 - MPMX19_02897 0.38 +0.9
152,466 + MPMX19_02897 0.56 -0.6
152,466 + MPMX19_02897 0.56 -0.6
152,466 + MPMX19_02897 0.56 +0.8
152,466 + MPMX19_02897 0.56 -1.8
152,466 + MPMX19_02897 0.56 -1.6
152,466 + MPMX19_02897 0.56 -0.8
152,466 + MPMX19_02897 0.56 +0.2
152,467 - MPMX19_02897 0.56 -0.1
152,467 - MPMX19_02897 0.56 -0.1
152,467 - MPMX19_02897 0.56 -0.1
152,467 - MPMX19_02897 0.56 -1.4
152,467 - MPMX19_02897 0.56 -1.0
152,467 - MPMX19_02897 0.56 +0.6
152,518 + MPMX19_02897 0.61 +0.6
152,519 - MPMX19_02897 0.61 -1.8
152,696 - MPMX19_02897 0.76 -0.2
152,761 + MPMX19_02897 0.82 +0.1
152,761 + MPMX19_02897 0.82 +0.1
152,761 + MPMX19_02897 0.82 +0.7
152,762 - MPMX19_02897 0.82 +0.3
152,776 + MPMX19_02897 0.84 +0.4
152,872 + -0.8
152,873 - -1.0
152,873 - +1.5
152,873 - +0.9
152,943 - -0.1
152,943 - +0.4
153,030 - +2.4
153,030 - -2.7
153,030 - -0.4
153,030 - -0.4
153,030 - +0.5
153,591 + MPMX19_02898 0.47 +0.2
153,591 + MPMX19_02898 0.47 -0.5
153,591 + MPMX19_02898 0.47 +0.8
153,591 + MPMX19_02898 0.47 -0.3
153,591 + MPMX19_02898 0.47 -0.3
153,591 + MPMX19_02898 0.47 -0.6
153,592 - MPMX19_02898 0.47 +0.5
153,592 - MPMX19_02898 0.47 -1.3
153,852 - MPMX19_02898 0.66 +0.7
153,868 + MPMX19_02898 0.67 -0.1
153,887 + MPMX19_02898 0.69 +0.3
153,887 + MPMX19_02898 0.69 +0.7
153,887 + MPMX19_02898 0.69 +0.5
153,887 + MPMX19_02898 0.69 -0.6
153,887 + MPMX19_02898 0.69 +0.7
153,887 + MPMX19_02898 0.69 +0.7
153,887 + MPMX19_02898 0.69 +0.3
153,887 + MPMX19_02898 0.69 -0.2
153,888 - MPMX19_02898 0.69 +0.2
153,888 - MPMX19_02898 0.69 +0.5
153,944 + MPMX19_02898 0.73 +0.3
153,944 + MPMX19_02898 0.73 +0.5
153,945 - MPMX19_02898 0.73 -1.8
154,026 + MPMX19_02898 0.79 -1.6
154,060 + MPMX19_02898 0.81 +0.2
154,060 + MPMX19_02898 0.81 -0.2
154,060 + MPMX19_02898 0.81 -1.5
154,061 - MPMX19_02898 0.81 +0.4
154,098 - MPMX19_02898 0.84 -0.8
154,098 - MPMX19_02898 0.84 +0.3
154,112 + MPMX19_02898 0.85 -0.3
154,112 + MPMX19_02898 0.85 +1.7
154,112 + MPMX19_02898 0.85 +0.8
154,197 + +0.0
154,197 + +1.4
154,197 + +0.6
154,198 - -1.6
154,198 - +0.7
154,198 - -0.0
154,198 - +1.1
154,383 + +0.1
154,453 + -0.2
154,453 + -1.6
154,453 + -3.2
154,453 + +0.3
154,453 + -0.8
154,453 + +0.4
154,453 + +0.0
154,453 + -1.0
154,454 - +0.4
154,454 - +0.9
154,454 - -2.0
154,454 - +0.4
154,454 - -1.2
154,454 - -0.7
154,493 + -0.4
154,494 - -0.4
154,494 - -0.4
154,610 + -1.0
154,610 + +0.6
154,611 - +0.5
154,874 + -0.2
154,874 + +0.2
154,874 + +1.4
154,874 + -0.7
154,874 + -0.3
154,874 + +0.8
154,874 + -1.4
154,874 + -0.4
154,874 + -0.1
154,874 + -0.2
154,875 - -1.4
154,875 - -1.2
154,875 - -0.4
154,875 - -0.0
154,875 - -1.6
154,875 - +0.8
154,875 - +0.9
154,875 - +0.1
154,875 - -2.3
154,875 - -0.2
154,937 + MPMX19_02899 0.17 +1.0
154,937 + MPMX19_02899 0.17 +0.8
154,937 + MPMX19_02899 0.17 +1.4
154,937 + MPMX19_02899 0.17 +1.2
154,937 + MPMX19_02899 0.17 +0.9
154,937 + MPMX19_02899 0.17 -0.5
154,937 + MPMX19_02899 0.17 +0.8
154,937 + MPMX19_02899 0.17 -1.2
154,937 + MPMX19_02899 0.17 +0.5
154,938 - MPMX19_02899 0.18 -0.5
154,938 - MPMX19_02899 0.18 -0.4
154,938 - MPMX19_02899 0.18 +0.2
154,938 - MPMX19_02899 0.18 -0.8
154,938 - MPMX19_02899 0.18 -0.4
154,938 - MPMX19_02899 0.18 +0.5
154,938 - MPMX19_02899 0.18 +0.9
154,938 - MPMX19_02899 0.18 -1.6
155,032 + MPMX19_02899 0.32 +0.2
155,032 + MPMX19_02899 0.32 -1.0
155,032 + MPMX19_02899 0.32 +0.8
155,032 + MPMX19_02899 0.32 -1.0
155,033 - MPMX19_02899 0.32 +0.6
155,033 - MPMX19_02899 0.32 -2.4
155,033 - MPMX19_02899 0.32 +0.5
155,033 - MPMX19_02899 0.32 -0.6
155,033 - MPMX19_02899 0.32 -1.0
155,033 - MPMX19_02899 0.32 -1.0
155,033 - MPMX19_02899 0.32 +0.7
155,195 + MPMX19_02899 0.57 -1.0
155,195 + MPMX19_02899 0.57 -1.0
155,196 - MPMX19_02899 0.57 +0.2
155,196 - MPMX19_02899 0.57 -0.1
155,196 - MPMX19_02899 0.57 -0.2
155,196 - MPMX19_02899 0.57 +0.3

Or see this region's nucleotide sequence