Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02826

Experiment: NL-CCM; spin-x control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_02825 and MPMX19_02826 are separated by 169 nucleotidesMPMX19_02826 and MPMX19_02827 overlap by 4 nucleotidesMPMX19_02827 and MPMX19_02828 are separated by 49 nucleotides MPMX19_02825: MPMX19_02825 - Oligopeptide-binding protein AppA, at 65,437 to 67,104 _02825 MPMX19_02826: MPMX19_02826 - Dipeptide transport system permease protein DppB, at 67,274 to 68,254 _02826 MPMX19_02827: MPMX19_02827 - Dipeptide transport system permease protein DppC, at 68,251 to 69,093 _02827 MPMX19_02828: MPMX19_02828 - Glutathione import ATP-binding protein GsiA, at 69,143 to 70,789 _02828 Position (kb) 67 68 69Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 66.337 kb on + strand, within MPMX19_02825at 66.514 kb on + strand, within MPMX19_02825at 66.514 kb on + strand, within MPMX19_02825at 66.514 kb on + strand, within MPMX19_02825at 66.515 kb on - strand, within MPMX19_02825at 66.535 kb on + strand, within MPMX19_02825at 66.535 kb on + strand, within MPMX19_02825at 66.535 kb on + strand, within MPMX19_02825at 66.535 kb on + strand, within MPMX19_02825at 66.535 kb on + strand, within MPMX19_02825at 66.535 kb on + strand, within MPMX19_02825at 66.536 kb on - strand, within MPMX19_02825at 66.536 kb on - strand, within MPMX19_02825at 66.536 kb on - strand, within MPMX19_02825at 66.536 kb on - strand, within MPMX19_02825at 66.536 kb on - strand, within MPMX19_02825at 66.536 kb on - strand, within MPMX19_02825at 66.638 kb on - strand, within MPMX19_02825at 66.667 kb on + strand, within MPMX19_02825at 66.668 kb on - strand, within MPMX19_02825at 66.761 kb on - strand, within MPMX19_02825at 66.761 kb on - strand, within MPMX19_02825at 66.784 kb on + strand, within MPMX19_02825at 66.784 kb on + strand, within MPMX19_02825at 66.784 kb on + strand, within MPMX19_02825at 66.785 kb on - strand, within MPMX19_02825at 66.785 kb on - strand, within MPMX19_02825at 66.790 kb on + strand, within MPMX19_02825at 66.791 kb on - strand, within MPMX19_02825at 66.823 kb on + strand, within MPMX19_02825at 66.823 kb on + strand, within MPMX19_02825at 66.823 kb on + strand, within MPMX19_02825at 66.823 kb on + strand, within MPMX19_02825at 66.823 kb on + strand, within MPMX19_02825at 66.823 kb on + strand, within MPMX19_02825at 66.823 kb on + strand, within MPMX19_02825at 66.823 kb on + strand, within MPMX19_02825at 66.823 kb on + strand, within MPMX19_02825at 66.823 kb on + strand, within MPMX19_02825at 66.823 kb on + strand, within MPMX19_02825at 66.823 kb on + strand, within MPMX19_02825at 66.823 kb on + strand, within MPMX19_02825at 66.823 kb on + strand, within MPMX19_02825at 66.824 kb on - strand, within MPMX19_02825at 66.824 kb on - strand, within MPMX19_02825at 66.824 kb on - strand, within MPMX19_02825at 66.824 kb on - strand, within MPMX19_02825at 66.824 kb on - strand, within MPMX19_02825at 66.824 kb on - strand, within MPMX19_02825at 66.824 kb on - strand, within MPMX19_02825at 66.824 kb on - strand, within MPMX19_02825at 66.824 kb on - strand, within MPMX19_02825at 66.824 kb on - strand, within MPMX19_02825at 66.824 kb on - strand, within MPMX19_02825at 66.824 kb on - strand, within MPMX19_02825at 66.824 kb on - strand, within MPMX19_02825at 66.874 kb on + strand, within MPMX19_02825at 66.949 kb on + strandat 66.949 kb on + strandat 66.949 kb on + strandat 66.949 kb on + strandat 66.950 kb on - strandat 66.950 kb on - strandat 66.950 kb on - strandat 66.950 kb on - strandat 66.950 kb on - strandat 67.078 kb on + strandat 67.078 kb on + strandat 67.078 kb on + strandat 67.078 kb on + strandat 67.078 kb on + strandat 67.078 kb on + strandat 67.078 kb on + strandat 67.078 kb on + strandat 67.078 kb on + strandat 67.078 kb on + strandat 67.078 kb on + strandat 67.078 kb on + strandat 67.078 kb on + strandat 67.078 kb on + strandat 67.078 kb on + strandat 67.079 kb on - strandat 67.079 kb on - strandat 67.079 kb on - strandat 67.079 kb on - strandat 67.079 kb on - strandat 67.079 kb on - strandat 67.079 kb on - strandat 67.079 kb on - strandat 67.079 kb on - strandat 67.079 kb on - strandat 67.102 kb on + strandat 67.102 kb on + strandat 67.103 kb on - strandat 67.103 kb on - strandat 67.103 kb on - strandat 67.151 kb on + strandat 67.197 kb on - strandat 67.197 kb on - strandat 67.197 kb on - strandat 67.197 kb on - strandat 67.197 kb on - strandat 67.197 kb on - strandat 67.197 kb on - strandat 67.197 kb on - strandat 67.197 kb on - strandat 67.197 kb on - strandat 67.197 kb on - strandat 67.242 kb on - strandat 67.242 kb on - strandat 67.261 kb on + strandat 67.261 kb on + strandat 67.262 kb on - strandat 67.262 kb on - strandat 67.262 kb on - strandat 67.262 kb on - strandat 67.344 kb on + strandat 67.344 kb on + strandat 67.344 kb on + strandat 67.344 kb on + strandat 67.344 kb on + strandat 67.345 kb on - strandat 67.345 kb on - strandat 67.345 kb on - strandat 67.472 kb on + strand, within MPMX19_02826at 67.473 kb on - strand, within MPMX19_02826at 67.473 kb on - strand, within MPMX19_02826at 67.473 kb on - strand, within MPMX19_02826at 67.490 kb on + strand, within MPMX19_02826at 67.490 kb on + strand, within MPMX19_02826at 67.490 kb on + strand, within MPMX19_02826at 67.490 kb on + strand, within MPMX19_02826at 67.491 kb on - strand, within MPMX19_02826at 67.491 kb on - strand, within MPMX19_02826at 67.491 kb on - strand, within MPMX19_02826at 67.491 kb on - strand, within MPMX19_02826at 67.491 kb on - strand, within MPMX19_02826at 67.491 kb on - strand, within MPMX19_02826at 67.491 kb on - strand, within MPMX19_02826at 67.491 kb on - strand, within MPMX19_02826at 67.529 kb on + strand, within MPMX19_02826at 67.706 kb on + strand, within MPMX19_02826at 67.706 kb on + strand, within MPMX19_02826at 67.706 kb on + strand, within MPMX19_02826at 67.707 kb on - strand, within MPMX19_02826at 67.721 kb on + strand, within MPMX19_02826at 67.722 kb on - strand, within MPMX19_02826at 67.787 kb on + strand, within MPMX19_02826at 67.880 kb on + strand, within MPMX19_02826at 67.880 kb on + strand, within MPMX19_02826at 67.880 kb on + strand, within MPMX19_02826at 67.880 kb on + strand, within MPMX19_02826at 67.880 kb on + strand, within MPMX19_02826at 67.880 kb on + strand, within MPMX19_02826at 67.880 kb on + strand, within MPMX19_02826at 67.880 kb on + strand, within MPMX19_02826at 67.880 kb on + strand, within MPMX19_02826at 67.880 kb on + strand, within MPMX19_02826at 67.880 kb on + strand, within MPMX19_02826at 67.881 kb on - strand, within MPMX19_02826at 67.881 kb on - strand, within MPMX19_02826at 67.881 kb on - strand, within MPMX19_02826at 67.892 kb on + strand, within MPMX19_02826at 67.893 kb on - strand, within MPMX19_02826at 68.141 kb on + strand, within MPMX19_02826at 68.141 kb on + strand, within MPMX19_02826at 68.141 kb on + strand, within MPMX19_02826at 68.141 kb on + strand, within MPMX19_02826at 68.141 kb on + strand, within MPMX19_02826at 68.142 kb on - strand, within MPMX19_02826at 68.142 kb on - strand, within MPMX19_02826at 68.142 kb on - strand, within MPMX19_02826at 68.142 kb on - strand, within MPMX19_02826at 68.217 kb on - strandat 68.938 kb on + strand, within MPMX19_02827at 68.938 kb on + strand, within MPMX19_02827at 68.938 kb on + strand, within MPMX19_02827at 68.938 kb on + strand, within MPMX19_02827at 68.938 kb on + strand, within MPMX19_02827at 68.938 kb on + strand, within MPMX19_02827at 68.938 kb on + strand, within MPMX19_02827at 68.938 kb on + strand, within MPMX19_02827at 68.939 kb on - strand, within MPMX19_02827at 68.939 kb on - strand, within MPMX19_02827at 68.939 kb on - strand, within MPMX19_02827at 68.939 kb on - strand, within MPMX19_02827at 68.939 kb on - strand, within MPMX19_02827at 68.939 kb on - strand, within MPMX19_02827at 68.939 kb on - strand, within MPMX19_02827at 68.939 kb on - strand, within MPMX19_02827at 68.939 kb on - strand, within MPMX19_02827at 68.939 kb on - strand, within MPMX19_02827

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; spin-x control
remove
66,337 + MPMX19_02825 0.54 +0.8
66,514 + MPMX19_02825 0.65 -0.4
66,514 + MPMX19_02825 0.65 +0.1
66,514 + MPMX19_02825 0.65 +1.2
66,515 - MPMX19_02825 0.65 +0.8
66,535 + MPMX19_02825 0.66 +0.4
66,535 + MPMX19_02825 0.66 -1.3
66,535 + MPMX19_02825 0.66 -2.1
66,535 + MPMX19_02825 0.66 +0.8
66,535 + MPMX19_02825 0.66 -0.4
66,535 + MPMX19_02825 0.66 -2.4
66,536 - MPMX19_02825 0.66 +0.0
66,536 - MPMX19_02825 0.66 +1.0
66,536 - MPMX19_02825 0.66 +0.2
66,536 - MPMX19_02825 0.66 +0.4
66,536 - MPMX19_02825 0.66 -1.2
66,536 - MPMX19_02825 0.66 -1.6
66,638 - MPMX19_02825 0.72 +0.7
66,667 + MPMX19_02825 0.74 -0.8
66,668 - MPMX19_02825 0.74 +0.8
66,761 - MPMX19_02825 0.79 +0.5
66,761 - MPMX19_02825 0.79 -1.1
66,784 + MPMX19_02825 0.81 +1.2
66,784 + MPMX19_02825 0.81 -0.4
66,784 + MPMX19_02825 0.81 -0.6
66,785 - MPMX19_02825 0.81 -0.6
66,785 - MPMX19_02825 0.81 +1.7
66,790 + MPMX19_02825 0.81 -0.9
66,791 - MPMX19_02825 0.81 +0.5
66,823 + MPMX19_02825 0.83 -0.5
66,823 + MPMX19_02825 0.83 +0.2
66,823 + MPMX19_02825 0.83 +0.0
66,823 + MPMX19_02825 0.83 +0.1
66,823 + MPMX19_02825 0.83 -1.4
66,823 + MPMX19_02825 0.83 -0.4
66,823 + MPMX19_02825 0.83 -1.1
66,823 + MPMX19_02825 0.83 +0.0
66,823 + MPMX19_02825 0.83 -1.9
66,823 + MPMX19_02825 0.83 -2.0
66,823 + MPMX19_02825 0.83 -2.0
66,823 + MPMX19_02825 0.83 -1.8
66,823 + MPMX19_02825 0.83 +0.7
66,823 + MPMX19_02825 0.83 -1.7
66,824 - MPMX19_02825 0.83 -0.2
66,824 - MPMX19_02825 0.83 -2.5
66,824 - MPMX19_02825 0.83 -0.4
66,824 - MPMX19_02825 0.83 +0.4
66,824 - MPMX19_02825 0.83 -0.8
66,824 - MPMX19_02825 0.83 -1.1
66,824 - MPMX19_02825 0.83 +0.5
66,824 - MPMX19_02825 0.83 -0.1
66,824 - MPMX19_02825 0.83 -0.8
66,824 - MPMX19_02825 0.83 +0.6
66,824 - MPMX19_02825 0.83 +0.5
66,824 - MPMX19_02825 0.83 -2.6
66,824 - MPMX19_02825 0.83 +1.8
66,874 + MPMX19_02825 0.86 -0.2
66,949 + +0.4
66,949 + -0.4
66,949 + -1.2
66,949 + -0.2
66,950 - +0.8
66,950 - -1.0
66,950 - +0.6
66,950 - -0.2
66,950 - +0.4
67,078 + +1.0
67,078 + -0.7
67,078 + -0.3
67,078 + -2.4
67,078 + -0.0
67,078 + +0.1
67,078 + +1.1
67,078 + +0.1
67,078 + +0.1
67,078 + +0.0
67,078 + -0.2
67,078 + +0.2
67,078 + -1.8
67,078 + -3.1
67,078 + -1.0
67,079 - -0.0
67,079 - +0.0
67,079 - -0.2
67,079 - +0.5
67,079 - -0.6
67,079 - -0.9
67,079 - -0.4
67,079 - +0.6
67,079 - +2.4
67,079 - -1.0
67,102 + -0.3
67,102 + +0.9
67,103 - -0.0
67,103 - -1.4
67,103 - -0.4
67,151 + +0.4
67,197 - -0.4
67,197 - +0.6
67,197 - -0.2
67,197 - -0.3
67,197 - -0.2
67,197 - -0.0
67,197 - -0.2
67,197 - +0.6
67,197 - -0.3
67,197 - +0.9
67,197 - -0.4
67,242 - +0.5
67,242 - -0.3
67,261 + -0.4
67,261 + -1.1
67,262 - -0.1
67,262 - +0.8
67,262 - +0.5
67,262 - +0.1
67,344 + -0.6
67,344 + +1.4
67,344 + -0.9
67,344 + -0.2
67,344 + +0.7
67,345 - -0.3
67,345 - -0.8
67,345 - -0.6
67,472 + MPMX19_02826 0.20 +0.6
67,473 - MPMX19_02826 0.20 -0.6
67,473 - MPMX19_02826 0.20 +0.9
67,473 - MPMX19_02826 0.20 +0.2
67,490 + MPMX19_02826 0.22 +0.7
67,490 + MPMX19_02826 0.22 +0.4
67,490 + MPMX19_02826 0.22 -1.1
67,490 + MPMX19_02826 0.22 -0.3
67,491 - MPMX19_02826 0.22 +0.2
67,491 - MPMX19_02826 0.22 -0.6
67,491 - MPMX19_02826 0.22 +0.2
67,491 - MPMX19_02826 0.22 +0.2
67,491 - MPMX19_02826 0.22 -1.0
67,491 - MPMX19_02826 0.22 -0.8
67,491 - MPMX19_02826 0.22 -1.1
67,491 - MPMX19_02826 0.22 -0.6
67,529 + MPMX19_02826 0.26 +0.8
67,706 + MPMX19_02826 0.44 +0.3
67,706 + MPMX19_02826 0.44 +0.4
67,706 + MPMX19_02826 0.44 +0.1
67,707 - MPMX19_02826 0.44 -0.4
67,721 + MPMX19_02826 0.46 +1.1
67,722 - MPMX19_02826 0.46 +0.4
67,787 + MPMX19_02826 0.52 -0.1
67,880 + MPMX19_02826 0.62 -0.4
67,880 + MPMX19_02826 0.62 -0.1
67,880 + MPMX19_02826 0.62 -0.1
67,880 + MPMX19_02826 0.62 -2.8
67,880 + MPMX19_02826 0.62 +0.2
67,880 + MPMX19_02826 0.62 -0.1
67,880 + MPMX19_02826 0.62 -1.1
67,880 + MPMX19_02826 0.62 -0.9
67,880 + MPMX19_02826 0.62 +0.6
67,880 + MPMX19_02826 0.62 -0.9
67,880 + MPMX19_02826 0.62 +0.1
67,881 - MPMX19_02826 0.62 -0.1
67,881 - MPMX19_02826 0.62 +0.9
67,881 - MPMX19_02826 0.62 -0.2
67,892 + MPMX19_02826 0.63 +0.2
67,893 - MPMX19_02826 0.63 +0.4
68,141 + MPMX19_02826 0.88 -0.8
68,141 + MPMX19_02826 0.88 -0.2
68,141 + MPMX19_02826 0.88 -0.6
68,141 + MPMX19_02826 0.88 +0.8
68,141 + MPMX19_02826 0.88 +1.4
68,142 - MPMX19_02826 0.88 -1.0
68,142 - MPMX19_02826 0.88 -1.1
68,142 - MPMX19_02826 0.88 +1.2
68,142 - MPMX19_02826 0.88 -0.1
68,217 - +0.7
68,938 + MPMX19_02827 0.81 +0.8
68,938 + MPMX19_02827 0.81 +0.8
68,938 + MPMX19_02827 0.81 -1.1
68,938 + MPMX19_02827 0.81 -0.4
68,938 + MPMX19_02827 0.81 +0.1
68,938 + MPMX19_02827 0.81 +0.6
68,938 + MPMX19_02827 0.81 -0.2
68,938 + MPMX19_02827 0.81 -0.8
68,939 - MPMX19_02827 0.82 +0.3
68,939 - MPMX19_02827 0.82 -2.7
68,939 - MPMX19_02827 0.82 +0.2
68,939 - MPMX19_02827 0.82 +0.2
68,939 - MPMX19_02827 0.82 -0.0
68,939 - MPMX19_02827 0.82 -0.4
68,939 - MPMX19_02827 0.82 -0.7
68,939 - MPMX19_02827 0.82 -0.1
68,939 - MPMX19_02827 0.82 -0.4
68,939 - MPMX19_02827 0.82 -0.4

Or see this region's nucleotide sequence