Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00678

Experiment: NL-CCM; spin-x control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00677 and MPMX19_00678 are separated by 115 nucleotidesMPMX19_00678 and MPMX19_00679 are separated by 101 nucleotides MPMX19_00677: MPMX19_00677 - hypothetical protein, at 699,615 to 700,406 _00677 MPMX19_00678: MPMX19_00678 - Inositol-1-monophosphatase, at 700,522 to 701,319 _00678 MPMX19_00679: MPMX19_00679 - Elongation factor P, at 701,421 to 701,987 _00679 Position (kb) 700 701 702Strain fitness (log2 ratio) -2 -1 0 1 2at 699.525 kb on + strandat 699.525 kb on + strandat 699.525 kb on + strandat 699.526 kb on - strandat 699.526 kb on - strandat 699.552 kb on + strandat 699.552 kb on + strandat 699.553 kb on - strandat 699.616 kb on + strandat 699.616 kb on + strandat 699.616 kb on + strandat 699.616 kb on + strandat 699.617 kb on - strandat 699.617 kb on - strandat 699.617 kb on - strandat 700.413 kb on - strandat 700.413 kb on - strandat 700.445 kb on - strandat 700.445 kb on - strandat 700.445 kb on - strandat 700.445 kb on - strandat 700.445 kb on - strandat 700.445 kb on - strandat 700.445 kb on - strandat 700.445 kb on - strandat 701.364 kb on - strandat 701.364 kb on - strandat 701.364 kb on - strandat 701.364 kb on - strandat 701.364 kb on - strandat 701.364 kb on - strandat 701.364 kb on - strandat 701.364 kb on - strandat 702.012 kb on - strandat 702.012 kb on - strandat 702.012 kb on - strandat 702.127 kb on + strandat 702.127 kb on + strandat 702.128 kb on - strandat 702.128 kb on - strandat 702.128 kb on - strandat 702.249 kb on + strandat 702.249 kb on + strandat 702.249 kb on + strandat 702.249 kb on + strandat 702.249 kb on + strandat 702.249 kb on + strandat 702.250 kb on - strandat 702.291 kb on + strandat 702.291 kb on + strandat 702.292 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; spin-x control
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699,525 + +0.8
699,525 + +0.6
699,525 + -0.3
699,526 - -0.8
699,526 - -1.5
699,552 + -0.6
699,552 + +0.5
699,553 - -0.6
699,616 + -0.4
699,616 + -0.6
699,616 + -0.1
699,616 + +0.9
699,617 - +1.1
699,617 - +0.8
699,617 - +1.3
700,413 - +0.5
700,413 - -0.4
700,445 - -2.1
700,445 - +1.2
700,445 - +0.3
700,445 - +0.4
700,445 - -1.0
700,445 - +0.5
700,445 - +0.1
700,445 - +1.0
701,364 - +1.8
701,364 - -0.5
701,364 - -1.3
701,364 - -0.7
701,364 - +0.1
701,364 - -0.5
701,364 - +0.3
701,364 - -1.9
702,012 - -1.0
702,012 - +1.3
702,012 - -1.5
702,127 + +1.0
702,127 + -0.7
702,128 - -0.3
702,128 - +0.8
702,128 - -0.4
702,249 + +0.7
702,249 + -0.7
702,249 + +0.3
702,249 + -0.3
702,249 + +1.8
702,249 + +1.3
702,250 - -0.2
702,291 + +0.1
702,291 + -0.5
702,292 - -0.0

Or see this region's nucleotide sequence