Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00340

Experiment: NL-CCM; spin-x control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00339 and MPMX19_00340 are separated by 215 nucleotidesMPMX19_00340 and MPMX19_00341 are separated by 71 nucleotides MPMX19_00339: MPMX19_00339 - hypothetical protein, at 344,418 to 345,917 _00339 MPMX19_00340: MPMX19_00340 - Penicillin-binding protein 1A, at 346,133 to 348,670 _00340 MPMX19_00341: MPMX19_00341 - hypothetical protein, at 348,742 to 349,866 _00341 Position (kb) 346 347 348 349Strain fitness (log2 ratio) -2 -1 0 1 2at 345.941 kb on - strandat 346.038 kb on + strandat 346.038 kb on + strandat 346.038 kb on + strandat 346.038 kb on + strandat 346.038 kb on + strandat 346.038 kb on + strandat 346.038 kb on + strandat 346.038 kb on + strandat 346.038 kb on + strandat 346.038 kb on + strandat 348.989 kb on + strand, within MPMX19_00341at 348.989 kb on + strand, within MPMX19_00341at 348.989 kb on + strand, within MPMX19_00341at 348.989 kb on + strand, within MPMX19_00341at 348.989 kb on + strand, within MPMX19_00341at 348.989 kb on + strand, within MPMX19_00341at 348.989 kb on + strand, within MPMX19_00341at 348.989 kb on + strand, within MPMX19_00341at 348.989 kb on + strand, within MPMX19_00341at 348.989 kb on + strand, within MPMX19_00341at 348.990 kb on - strand, within MPMX19_00341at 348.990 kb on - strand, within MPMX19_00341at 348.990 kb on - strand, within MPMX19_00341at 348.990 kb on - strand, within MPMX19_00341at 348.990 kb on - strand, within MPMX19_00341at 348.990 kb on - strand, within MPMX19_00341at 348.990 kb on - strand, within MPMX19_00341at 348.990 kb on - strand, within MPMX19_00341at 348.990 kb on - strand, within MPMX19_00341at 348.990 kb on - strand, within MPMX19_00341at 348.990 kb on - strand, within MPMX19_00341at 348.990 kb on - strand, within MPMX19_00341at 348.990 kb on - strand, within MPMX19_00341at 348.990 kb on - strand, within MPMX19_00341at 348.991 kb on - strand, within MPMX19_00341at 349.001 kb on + strand, within MPMX19_00341at 349.001 kb on + strand, within MPMX19_00341at 349.001 kb on + strand, within MPMX19_00341at 349.002 kb on - strand, within MPMX19_00341at 349.002 kb on - strand, within MPMX19_00341at 349.298 kb on + strand, within MPMX19_00341at 349.298 kb on + strand, within MPMX19_00341at 349.298 kb on + strand, within MPMX19_00341at 349.298 kb on + strand, within MPMX19_00341at 349.298 kb on + strand, within MPMX19_00341at 349.298 kb on + strand, within MPMX19_00341at 349.298 kb on + strand, within MPMX19_00341at 349.298 kb on + strand, within MPMX19_00341at 349.298 kb on + strand, within MPMX19_00341at 349.298 kb on + strand, within MPMX19_00341at 349.299 kb on - strand, within MPMX19_00341at 349.299 kb on - strand, within MPMX19_00341at 349.299 kb on - strand, within MPMX19_00341at 349.299 kb on - strand, within MPMX19_00341at 349.299 kb on - strand, within MPMX19_00341at 349.299 kb on - strand, within MPMX19_00341at 349.299 kb on - strand, within MPMX19_00341at 349.299 kb on - strand, within MPMX19_00341at 349.299 kb on - strand, within MPMX19_00341at 349.299 kb on - strand, within MPMX19_00341at 349.299 kb on - strand, within MPMX19_00341at 349.299 kb on - strand, within MPMX19_00341at 349.299 kb on - strand, within MPMX19_00341at 349.299 kb on - strand, within MPMX19_00341at 349.299 kb on - strand, within MPMX19_00341at 349.299 kb on - strand, within MPMX19_00341at 349.299 kb on - strand, within MPMX19_00341at 349.301 kb on + strand, within MPMX19_00341at 349.301 kb on + strand, within MPMX19_00341at 349.302 kb on - strand, within MPMX19_00341at 349.302 kb on - strand, within MPMX19_00341at 349.302 kb on - strand, within MPMX19_00341at 349.302 kb on - strand, within MPMX19_00341at 349.397 kb on + strand, within MPMX19_00341at 349.397 kb on + strand, within MPMX19_00341at 349.397 kb on + strand, within MPMX19_00341at 349.397 kb on + strand, within MPMX19_00341at 349.397 kb on + strand, within MPMX19_00341at 349.397 kb on + strand, within MPMX19_00341at 349.397 kb on + strand, within MPMX19_00341at 349.398 kb on - strand, within MPMX19_00341at 349.398 kb on - strand, within MPMX19_00341at 349.398 kb on - strand, within MPMX19_00341at 349.398 kb on - strand, within MPMX19_00341at 349.398 kb on - strand, within MPMX19_00341at 349.398 kb on - strand, within MPMX19_00341at 349.398 kb on - strand, within MPMX19_00341at 349.398 kb on - strand, within MPMX19_00341at 349.398 kb on - strand, within MPMX19_00341at 349.398 kb on - strand, within MPMX19_00341

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; spin-x control
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345,941 - +0.5
346,038 + +0.4
346,038 + -0.3
346,038 + -0.7
346,038 + -0.3
346,038 + -2.3
346,038 + -0.8
346,038 + -0.1
346,038 + +0.5
346,038 + +0.4
346,038 + -0.7
348,989 + MPMX19_00341 0.22 +2.0
348,989 + MPMX19_00341 0.22 -0.5
348,989 + MPMX19_00341 0.22 -1.1
348,989 + MPMX19_00341 0.22 +0.8
348,989 + MPMX19_00341 0.22 +1.4
348,989 + MPMX19_00341 0.22 +0.1
348,989 + MPMX19_00341 0.22 -0.6
348,989 + MPMX19_00341 0.22 -1.9
348,989 + MPMX19_00341 0.22 -1.4
348,989 + MPMX19_00341 0.22 -1.2
348,990 - MPMX19_00341 0.22 +0.3
348,990 - MPMX19_00341 0.22 -1.2
348,990 - MPMX19_00341 0.22 -0.8
348,990 - MPMX19_00341 0.22 -0.0
348,990 - MPMX19_00341 0.22 -1.0
348,990 - MPMX19_00341 0.22 -1.0
348,990 - MPMX19_00341 0.22 +0.6
348,990 - MPMX19_00341 0.22 +0.2
348,990 - MPMX19_00341 0.22 -1.5
348,990 - MPMX19_00341 0.22 -0.8
348,990 - MPMX19_00341 0.22 -0.2
348,990 - MPMX19_00341 0.22 -1.0
348,990 - MPMX19_00341 0.22 -0.4
348,990 - MPMX19_00341 0.22 -0.2
348,991 - MPMX19_00341 0.22 +0.9
349,001 + MPMX19_00341 0.23 -0.4
349,001 + MPMX19_00341 0.23 -1.7
349,001 + MPMX19_00341 0.23 -1.0
349,002 - MPMX19_00341 0.23 -0.7
349,002 - MPMX19_00341 0.23 -1.3
349,298 + MPMX19_00341 0.49 -1.0
349,298 + MPMX19_00341 0.49 +0.0
349,298 + MPMX19_00341 0.49 -0.8
349,298 + MPMX19_00341 0.49 -1.1
349,298 + MPMX19_00341 0.49 +1.2
349,298 + MPMX19_00341 0.49 +0.9
349,298 + MPMX19_00341 0.49 -0.2
349,298 + MPMX19_00341 0.49 +0.2
349,298 + MPMX19_00341 0.49 +0.5
349,298 + MPMX19_00341 0.49 -0.0
349,299 - MPMX19_00341 0.50 +0.6
349,299 - MPMX19_00341 0.50 -1.8
349,299 - MPMX19_00341 0.50 -0.1
349,299 - MPMX19_00341 0.50 -0.6
349,299 - MPMX19_00341 0.50 -0.2
349,299 - MPMX19_00341 0.50 -1.0
349,299 - MPMX19_00341 0.50 -0.2
349,299 - MPMX19_00341 0.50 -1.8
349,299 - MPMX19_00341 0.50 -2.1
349,299 - MPMX19_00341 0.50 -0.5
349,299 - MPMX19_00341 0.50 -0.4
349,299 - MPMX19_00341 0.50 +0.2
349,299 - MPMX19_00341 0.50 +0.6
349,299 - MPMX19_00341 0.50 -0.9
349,299 - MPMX19_00341 0.50 -1.4
349,299 - MPMX19_00341 0.50 -1.7
349,299 - MPMX19_00341 0.50 -1.4
349,301 + MPMX19_00341 0.50 -1.6
349,301 + MPMX19_00341 0.50 +0.1
349,302 - MPMX19_00341 0.50 +1.2
349,302 - MPMX19_00341 0.50 -2.3
349,302 - MPMX19_00341 0.50 +0.7
349,302 - MPMX19_00341 0.50 -0.3
349,397 + MPMX19_00341 0.58 +1.0
349,397 + MPMX19_00341 0.58 -1.9
349,397 + MPMX19_00341 0.58 -1.6
349,397 + MPMX19_00341 0.58 +0.7
349,397 + MPMX19_00341 0.58 -1.0
349,397 + MPMX19_00341 0.58 -0.1
349,397 + MPMX19_00341 0.58 +1.1
349,398 - MPMX19_00341 0.58 +0.1
349,398 - MPMX19_00341 0.58 +0.9
349,398 - MPMX19_00341 0.58 -0.1
349,398 - MPMX19_00341 0.58 -0.7
349,398 - MPMX19_00341 0.58 -0.1
349,398 - MPMX19_00341 0.58 +2.0
349,398 - MPMX19_00341 0.58 +0.6
349,398 - MPMX19_00341 0.58 +0.0
349,398 - MPMX19_00341 0.58 +0.8
349,398 - MPMX19_00341 0.58 -0.4

Or see this region's nucleotide sequence