Strain Fitness in Xanthobacter sp. DMC5 around GFF912

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF911 and GFF912 overlap by 4 nucleotidesGFF912 and GFF913 are separated by 516 nucleotides GFF911 - hypothetical protein, at 981,503 to 982,843 GFF911 GFF912 - putative MFS-type transporter YcaD, at 982,840 to 984,012 GFF912 GFF913 - Enoyl-[acyl-carrier-protein] reductase [NADH] FabI, at 984,529 to 985,356 GFF913 Position (kb) 982 983 984 985Strain fitness (log2 ratio) -2 -1 0 1at 982.049 kb on + strand, within GFF911at 982.049 kb on + strand, within GFF911at 982.049 kb on + strand, within GFF911at 982.050 kb on - strand, within GFF911at 982.050 kb on - strand, within GFF911at 982.050 kb on - strand, within GFF911at 982.050 kb on - strand, within GFF911at 982.050 kb on - strand, within GFF911at 982.068 kb on - strand, within GFF911at 982.068 kb on - strand, within GFF911at 982.068 kb on - strand, within GFF911at 982.196 kb on + strand, within GFF911at 982.197 kb on - strand, within GFF911at 982.268 kb on + strand, within GFF911at 982.268 kb on + strand, within GFF911at 982.269 kb on - strand, within GFF911at 982.376 kb on + strand, within GFF911at 982.376 kb on + strand, within GFF911at 982.377 kb on - strand, within GFF911at 982.377 kb on - strand, within GFF911at 982.382 kb on + strand, within GFF911at 982.382 kb on + strand, within GFF911at 982.487 kb on + strand, within GFF911at 982.488 kb on - strand, within GFF911at 982.625 kb on + strand, within GFF911at 982.625 kb on + strand, within GFF911at 982.625 kb on + strand, within GFF911at 982.626 kb on - strand, within GFF911at 982.626 kb on - strand, within GFF911at 982.679 kb on + strand, within GFF911at 982.679 kb on + strand, within GFF911at 982.679 kb on + strand, within GFF911at 982.680 kb on - strand, within GFF911at 982.945 kb on + strandat 982.946 kb on - strandat 982.946 kb on - strandat 982.946 kb on - strandat 983.225 kb on - strand, within GFF912at 983.284 kb on + strand, within GFF912at 983.284 kb on + strand, within GFF912at 983.362 kb on + strand, within GFF912at 983.363 kb on - strand, within GFF912at 983.551 kb on + strand, within GFF912at 983.552 kb on - strand, within GFF912at 983.552 kb on - strand, within GFF912at 983.752 kb on + strand, within GFF912at 983.752 kb on + strand, within GFF912at 983.753 kb on - strand, within GFF912at 983.753 kb on - strand, within GFF912at 983.753 kb on - strand, within GFF912at 983.753 kb on - strand, within GFF912at 983.753 kb on - strand, within GFF912at 983.753 kb on - strand, within GFF912at 983.794 kb on + strand, within GFF912at 983.794 kb on + strand, within GFF912at 983.794 kb on + strand, within GFF912at 983.794 kb on + strand, within GFF912at 983.794 kb on + strand, within GFF912at 983.794 kb on + strand, within GFF912at 983.794 kb on + strand, within GFF912at 983.794 kb on + strand, within GFF912at 983.794 kb on + strand, within GFF912at 983.795 kb on - strand, within GFF912at 983.795 kb on - strand, within GFF912at 983.854 kb on + strand, within GFF912at 983.854 kb on + strand, within GFF912at 984.246 kb on + strandat 984.247 kb on - strandat 984.280 kb on - strandat 984.454 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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982,049 + GFF911 0.41 -0.9
982,049 + GFF911 0.41 -0.4
982,049 + GFF911 0.41 +0.2
982,050 - GFF911 0.41 -0.2
982,050 - GFF911 0.41 -0.4
982,050 - GFF911 0.41 -0.3
982,050 - GFF911 0.41 -0.2
982,050 - GFF911 0.41 +1.0
982,068 - GFF911 0.42 -0.6
982,068 - GFF911 0.42 +0.1
982,068 - GFF911 0.42 -0.3
982,196 + GFF911 0.52 +0.7
982,197 - GFF911 0.52 +0.2
982,268 + GFF911 0.57 -0.2
982,268 + GFF911 0.57 -0.6
982,269 - GFF911 0.57 -0.3
982,376 + GFF911 0.65 +0.2
982,376 + GFF911 0.65 -0.8
982,377 - GFF911 0.65 +0.1
982,377 - GFF911 0.65 -0.0
982,382 + GFF911 0.66 -0.4
982,382 + GFF911 0.66 +0.4
982,487 + GFF911 0.73 +0.8
982,488 - GFF911 0.73 +0.5
982,625 + GFF911 0.84 +0.3
982,625 + GFF911 0.84 -0.5
982,625 + GFF911 0.84 +0.4
982,626 - GFF911 0.84 -0.4
982,626 - GFF911 0.84 -0.4
982,679 + GFF911 0.88 +0.5
982,679 + GFF911 0.88 -0.2
982,679 + GFF911 0.88 +1.0
982,680 - GFF911 0.88 +0.5
982,945 + -0.9
982,946 - -1.3
982,946 - -0.7
982,946 - +0.0
983,225 - GFF912 0.33 +0.8
983,284 + GFF912 0.38 -0.2
983,284 + GFF912 0.38 +0.2
983,362 + GFF912 0.45 -1.2
983,363 - GFF912 0.45 -0.6
983,551 + GFF912 0.61 -0.5
983,552 - GFF912 0.61 -0.9
983,552 - GFF912 0.61 +1.7
983,752 + GFF912 0.78 -1.8
983,752 + GFF912 0.78 +0.8
983,753 - GFF912 0.78 -0.7
983,753 - GFF912 0.78 -0.5
983,753 - GFF912 0.78 -2.4
983,753 - GFF912 0.78 -0.5
983,753 - GFF912 0.78 +0.6
983,753 - GFF912 0.78 -0.1
983,794 + GFF912 0.81 +1.0
983,794 + GFF912 0.81 -0.1
983,794 + GFF912 0.81 -1.5
983,794 + GFF912 0.81 -0.8
983,794 + GFF912 0.81 -0.1
983,794 + GFF912 0.81 -0.7
983,794 + GFF912 0.81 +0.0
983,794 + GFF912 0.81 -0.8
983,794 + GFF912 0.81 +0.4
983,795 - GFF912 0.81 -2.0
983,795 - GFF912 0.81 -0.7
983,854 + GFF912 0.86 +0.3
983,854 + GFF912 0.86 +0.5
984,246 + -0.2
984,247 - +0.2
984,280 - -0.4
984,454 + +1.4

Or see this region's nucleotide sequence