Strain Fitness in Xanthobacter sp. DMC5 around GFF911

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF909 and GFF910 are separated by 4 nucleotidesGFF910 and GFF911 are separated by 194 nucleotidesGFF911 and GFF912 overlap by 4 nucleotides GFF909 - Magnesium transporter MgtE, at 979,703 to 981,043 GFF909 GFF910 - hypothetical protein, at 981,048 to 981,308 GFF910 GFF911 - hypothetical protein, at 981,503 to 982,843 GFF911 GFF912 - putative MFS-type transporter YcaD, at 982,840 to 984,012 GFF912 Position (kb) 981 982 983Strain fitness (log2 ratio) -2 -1 0 1at 980.819 kb on + strand, within GFF909at 980.820 kb on - strand, within GFF909at 981.000 kb on - strandat 981.083 kb on - strand, within GFF910at 981.314 kb on + strandat 981.314 kb on + strandat 981.314 kb on + strandat 981.315 kb on - strandat 981.338 kb on + strandat 981.338 kb on + strandat 981.338 kb on + strandat 981.418 kb on + strandat 981.418 kb on + strandat 981.726 kb on + strand, within GFF911at 981.726 kb on + strand, within GFF911at 982.049 kb on + strand, within GFF911at 982.049 kb on + strand, within GFF911at 982.049 kb on + strand, within GFF911at 982.050 kb on - strand, within GFF911at 982.050 kb on - strand, within GFF911at 982.050 kb on - strand, within GFF911at 982.050 kb on - strand, within GFF911at 982.050 kb on - strand, within GFF911at 982.068 kb on - strand, within GFF911at 982.068 kb on - strand, within GFF911at 982.068 kb on - strand, within GFF911at 982.196 kb on + strand, within GFF911at 982.197 kb on - strand, within GFF911at 982.268 kb on + strand, within GFF911at 982.268 kb on + strand, within GFF911at 982.269 kb on - strand, within GFF911at 982.376 kb on + strand, within GFF911at 982.376 kb on + strand, within GFF911at 982.377 kb on - strand, within GFF911at 982.377 kb on - strand, within GFF911at 982.382 kb on + strand, within GFF911at 982.382 kb on + strand, within GFF911at 982.487 kb on + strand, within GFF911at 982.488 kb on - strand, within GFF911at 982.625 kb on + strand, within GFF911at 982.625 kb on + strand, within GFF911at 982.625 kb on + strand, within GFF911at 982.626 kb on - strand, within GFF911at 982.626 kb on - strand, within GFF911at 982.679 kb on + strand, within GFF911at 982.679 kb on + strand, within GFF911at 982.679 kb on + strand, within GFF911at 982.680 kb on - strand, within GFF911at 982.945 kb on + strandat 982.946 kb on - strandat 982.946 kb on - strandat 982.946 kb on - strandat 983.225 kb on - strand, within GFF912at 983.284 kb on + strand, within GFF912at 983.284 kb on + strand, within GFF912at 983.362 kb on + strand, within GFF912at 983.363 kb on - strand, within GFF912at 983.551 kb on + strand, within GFF912at 983.552 kb on - strand, within GFF912at 983.552 kb on - strand, within GFF912at 983.752 kb on + strand, within GFF912at 983.752 kb on + strand, within GFF912at 983.753 kb on - strand, within GFF912at 983.753 kb on - strand, within GFF912at 983.753 kb on - strand, within GFF912at 983.753 kb on - strand, within GFF912at 983.753 kb on - strand, within GFF912at 983.753 kb on - strand, within GFF912at 983.794 kb on + strand, within GFF912at 983.794 kb on + strand, within GFF912at 983.794 kb on + strand, within GFF912at 983.794 kb on + strand, within GFF912at 983.794 kb on + strand, within GFF912at 983.794 kb on + strand, within GFF912at 983.794 kb on + strand, within GFF912at 983.794 kb on + strand, within GFF912at 983.794 kb on + strand, within GFF912at 983.795 kb on - strand, within GFF912at 983.795 kb on - strand, within GFF912

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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980,819 + GFF909 0.83 -0.3
980,820 - GFF909 0.83 -0.1
981,000 - +0.4
981,083 - GFF910 0.13 +0.4
981,314 + +0.8
981,314 + -0.2
981,314 + +0.8
981,315 - -0.1
981,338 + -0.7
981,338 + -0.1
981,338 + +0.2
981,418 + -0.0
981,418 + +0.2
981,726 + GFF911 0.17 +0.4
981,726 + GFF911 0.17 -0.7
982,049 + GFF911 0.41 -0.9
982,049 + GFF911 0.41 -0.4
982,049 + GFF911 0.41 +0.2
982,050 - GFF911 0.41 -0.2
982,050 - GFF911 0.41 -0.4
982,050 - GFF911 0.41 -0.3
982,050 - GFF911 0.41 -0.2
982,050 - GFF911 0.41 +1.0
982,068 - GFF911 0.42 -0.6
982,068 - GFF911 0.42 +0.1
982,068 - GFF911 0.42 -0.3
982,196 + GFF911 0.52 +0.7
982,197 - GFF911 0.52 +0.2
982,268 + GFF911 0.57 -0.2
982,268 + GFF911 0.57 -0.6
982,269 - GFF911 0.57 -0.3
982,376 + GFF911 0.65 +0.2
982,376 + GFF911 0.65 -0.8
982,377 - GFF911 0.65 +0.1
982,377 - GFF911 0.65 -0.0
982,382 + GFF911 0.66 -0.4
982,382 + GFF911 0.66 +0.4
982,487 + GFF911 0.73 +0.8
982,488 - GFF911 0.73 +0.5
982,625 + GFF911 0.84 +0.3
982,625 + GFF911 0.84 -0.5
982,625 + GFF911 0.84 +0.4
982,626 - GFF911 0.84 -0.4
982,626 - GFF911 0.84 -0.4
982,679 + GFF911 0.88 +0.5
982,679 + GFF911 0.88 -0.2
982,679 + GFF911 0.88 +1.0
982,680 - GFF911 0.88 +0.5
982,945 + -0.9
982,946 - -1.3
982,946 - -0.7
982,946 - +0.0
983,225 - GFF912 0.33 +0.8
983,284 + GFF912 0.38 -0.2
983,284 + GFF912 0.38 +0.2
983,362 + GFF912 0.45 -1.2
983,363 - GFF912 0.45 -0.6
983,551 + GFF912 0.61 -0.5
983,552 - GFF912 0.61 -0.9
983,552 - GFF912 0.61 +1.7
983,752 + GFF912 0.78 -1.8
983,752 + GFF912 0.78 +0.8
983,753 - GFF912 0.78 -0.7
983,753 - GFF912 0.78 -0.5
983,753 - GFF912 0.78 -2.4
983,753 - GFF912 0.78 -0.5
983,753 - GFF912 0.78 +0.6
983,753 - GFF912 0.78 -0.1
983,794 + GFF912 0.81 +1.0
983,794 + GFF912 0.81 -0.1
983,794 + GFF912 0.81 -1.5
983,794 + GFF912 0.81 -0.8
983,794 + GFF912 0.81 -0.1
983,794 + GFF912 0.81 -0.7
983,794 + GFF912 0.81 +0.0
983,794 + GFF912 0.81 -0.8
983,794 + GFF912 0.81 +0.4
983,795 - GFF912 0.81 -2.0
983,795 - GFF912 0.81 -0.7

Or see this region's nucleotide sequence