Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF899 and GFF900 are separated by 88 nucleotides GFF900 and GFF901 are separated by 60 nucleotides GFF901 and GFF902 are separated by 22 nucleotides
GFF899 - DNA protection during starvation protein 1, at 968,552 to 969,091
GFF899
GFF900 - Urease subunit alpha 1, at 969,180 to 970,892
GFF900
GFF901 - Urease subunit alpha, at 970,953 to 971,573
GFF901
GFF902 - Urease accessory protein UreD, at 971,596 to 972,453
GFF902
Position (kb) 969
970
971 Strain fitness (log2 ratio) -1
0
1
2 at 968.494 kb on + strand at 968.501 kb on + strand at 968.502 kb on - strand at 968.625 kb on + strand, within GFF899 at 968.625 kb on + strand, within GFF899 at 968.625 kb on + strand, within GFF899 at 968.625 kb on + strand, within GFF899 at 968.626 kb on - strand, within GFF899 at 968.626 kb on - strand, within GFF899 at 968.754 kb on + strand, within GFF899 at 968.754 kb on + strand, within GFF899 at 968.755 kb on - strand, within GFF899 at 968.755 kb on - strand, within GFF899 at 968.860 kb on + strand, within GFF899 at 968.860 kb on + strand, within GFF899 at 968.901 kb on + strand, within GFF899 at 968.901 kb on + strand, within GFF899 at 968.955 kb on + strand, within GFF899 at 968.955 kb on + strand, within GFF899 at 968.956 kb on - strand, within GFF899 at 968.956 kb on - strand, within GFF899 at 968.956 kb on - strand, within GFF899 at 969.193 kb on + strand at 969.193 kb on + strand at 969.194 kb on - strand at 969.194 kb on - strand at 969.262 kb on + strand at 969.262 kb on + strand at 969.262 kb on + strand at 969.263 kb on - strand at 969.263 kb on - strand at 969.263 kb on - strand at 969.263 kb on - strand at 969.263 kb on - strand at 969.428 kb on + strand, within GFF900 at 969.429 kb on - strand, within GFF900 at 969.469 kb on + strand, within GFF900 at 969.664 kb on + strand, within GFF900 at 969.667 kb on + strand, within GFF900 at 969.667 kb on + strand, within GFF900 at 969.667 kb on + strand, within GFF900 at 969.668 kb on - strand, within GFF900 at 969.668 kb on - strand, within GFF900 at 969.680 kb on - strand, within GFF900 at 970.035 kb on - strand, within GFF900 at 970.211 kb on + strand, within GFF900 at 970.211 kb on + strand, within GFF900 at 970.212 kb on - strand, within GFF900 at 970.212 kb on - strand, within GFF900 at 970.311 kb on + strand, within GFF900 at 970.311 kb on + strand, within GFF900 at 970.312 kb on - strand, within GFF900 at 970.312 kb on - strand, within GFF900 at 970.682 kb on + strand, within GFF900 at 970.772 kb on - strand at 970.772 kb on - strand at 970.861 kb on + strand at 970.861 kb on + strand at 970.862 kb on - strand at 970.862 kb on - strand at 970.955 kb on - strand at 970.955 kb on - strand at 970.955 kb on - strand at 970.955 kb on - strand at 970.987 kb on + strand at 970.988 kb on - strand at 971.140 kb on + strand, within GFF901 at 971.140 kb on + strand, within GFF901 at 971.175 kb on - strand, within GFF901 at 971.752 kb on - strand, within GFF902 at 971.798 kb on + strand, within GFF902 at 971.799 kb on - strand, within GFF902 at 971.799 kb on - strand, within GFF902 at 971.891 kb on + strand, within GFF902 at 971.892 kb on - strand, within GFF902 at 971.892 kb on - strand, within GFF902 at 971.892 kb on - strand, within GFF902
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 968,494 + -0.2 968,501 + -0.1 968,502 - -0.7 968,625 + GFF899 0.14 -0.4 968,625 + GFF899 0.14 +0.2 968,625 + GFF899 0.14 +0.5 968,625 + GFF899 0.14 -0.5 968,626 - GFF899 0.14 -0.0 968,626 - GFF899 0.14 +1.0 968,754 + GFF899 0.37 +0.1 968,754 + GFF899 0.37 -0.2 968,755 - GFF899 0.38 -0.8 968,755 - GFF899 0.38 +0.0 968,860 + GFF899 0.57 +0.4 968,860 + GFF899 0.57 +0.3 968,901 + GFF899 0.65 +0.8 968,901 + GFF899 0.65 -0.6 968,955 + GFF899 0.75 -0.6 968,955 + GFF899 0.75 -0.1 968,956 - GFF899 0.75 +0.5 968,956 - GFF899 0.75 -0.1 968,956 - GFF899 0.75 -0.3 969,193 + +0.6 969,193 + +0.4 969,194 - -0.5 969,194 - +0.4 969,262 + +0.4 969,262 + -0.0 969,262 + +0.2 969,263 - -0.5 969,263 - -0.2 969,263 - +0.0 969,263 - -0.6 969,263 - +0.0 969,428 + GFF900 0.14 -1.1 969,429 - GFF900 0.15 +1.0 969,469 + GFF900 0.17 +0.1 969,664 + GFF900 0.28 -0.2 969,667 + GFF900 0.28 -0.1 969,667 + GFF900 0.28 +0.6 969,667 + GFF900 0.28 +0.4 969,668 - GFF900 0.28 -0.2 969,668 - GFF900 0.28 -1.1 969,680 - GFF900 0.29 +0.2 970,035 - GFF900 0.50 +0.6 970,211 + GFF900 0.60 +0.6 970,211 + GFF900 0.60 -0.6 970,212 - GFF900 0.60 -0.1 970,212 - GFF900 0.60 -0.5 970,311 + GFF900 0.66 +0.8 970,311 + GFF900 0.66 +0.3 970,312 - GFF900 0.66 -1.0 970,312 - GFF900 0.66 -1.1 970,682 + GFF900 0.88 -0.7 970,772 - +2.0 970,772 - +0.1 970,861 + +0.7 970,861 + +0.1 970,862 - +0.0 970,862 - +0.4 970,955 - +0.6 970,955 - -0.7 970,955 - +0.4 970,955 - +0.7 970,987 + -0.1 970,988 - -0.2 971,140 + GFF901 0.30 +0.1 971,140 + GFF901 0.30 +0.5 971,175 - GFF901 0.36 -0.4 971,752 - GFF902 0.18 -0.1 971,798 + GFF902 0.24 +1.2 971,799 - GFF902 0.24 -0.1 971,799 - GFF902 0.24 -0.6 971,891 + GFF902 0.34 -0.3 971,892 - GFF902 0.34 +0.7 971,892 - GFF902 0.34 -0.1 971,892 - GFF902 0.34 -0.1
Or see this region's nucleotide sequence