Strain Fitness in Xanthobacter sp. DMC5 around GFF893

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF891 and GFF892 are separated by 110 nucleotidesGFF892 and GFF893 are separated by 86 nucleotidesGFF893 and GFF894 overlap by 4 nucleotidesGFF894 and GFF895 are separated by 226 nucleotides GFF891 - hypothetical protein, at 961,301 to 962,143 GFF891 GFF892 - queuosine precursor transporter, at 962,254 to 963,027 GFF892 GFF893 - 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD, at 963,114 to 964,334 GFF893 GFF894 - 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA, at 964,331 to 965,050 GFF894 GFF895 - hypothetical protein, at 965,277 to 965,846 GFF895 Position (kb) 963 964 965Strain fitness (log2 ratio) -2 -1 0 1at 962.143 kb on + strandat 962.143 kb on + strandat 962.144 kb on - strandat 962.178 kb on - strandat 962.178 kb on - strandat 962.185 kb on + strandat 962.185 kb on + strandat 962.186 kb on - strandat 962.186 kb on - strandat 962.186 kb on - strandat 962.203 kb on + strandat 962.204 kb on - strandat 962.204 kb on - strandat 962.204 kb on - strandat 962.206 kb on + strandat 962.229 kb on + strandat 962.297 kb on + strandat 962.297 kb on + strandat 962.297 kb on + strandat 962.298 kb on - strandat 962.298 kb on - strandat 962.342 kb on + strand, within GFF892at 962.343 kb on - strand, within GFF892at 962.343 kb on - strand, within GFF892at 962.388 kb on - strand, within GFF892at 962.388 kb on - strand, within GFF892at 962.388 kb on - strand, within GFF892at 962.702 kb on + strand, within GFF892at 962.703 kb on - strand, within GFF892at 962.703 kb on - strand, within GFF892at 962.751 kb on - strand, within GFF892at 962.751 kb on - strand, within GFF892at 962.756 kb on + strand, within GFF892at 962.756 kb on + strand, within GFF892at 962.756 kb on + strand, within GFF892at 962.757 kb on - strand, within GFF892at 962.757 kb on - strand, within GFF892at 962.786 kb on + strand, within GFF892at 962.786 kb on + strand, within GFF892at 962.787 kb on - strand, within GFF892at 962.787 kb on - strand, within GFF892at 962.787 kb on - strand, within GFF892at 962.918 kb on + strand, within GFF892at 962.919 kb on - strand, within GFF892at 962.925 kb on - strand, within GFF892at 962.925 kb on - strand, within GFF892at 962.928 kb on - strand, within GFF892at 963.253 kb on + strand, within GFF893at 963.253 kb on + strand, within GFF893at 963.253 kb on + strand, within GFF893at 963.254 kb on - strand, within GFF893at 963.254 kb on - strand, within GFF893at 963.254 kb on - strand, within GFF893at 963.254 kb on - strand, within GFF893at 963.254 kb on - strand, within GFF893at 963.330 kb on + strand, within GFF893at 963.331 kb on - strand, within GFF893at 963.331 kb on - strand, within GFF893at 963.331 kb on - strand, within GFF893at 963.510 kb on - strand, within GFF893at 963.970 kb on + strand, within GFF893at 964.096 kb on + strand, within GFF893at 964.097 kb on - strand, within GFF893at 964.357 kb on - strandat 964.884 kb on + strand, within GFF894at 964.884 kb on + strand, within GFF894at 964.885 kb on - strand, within GFF894at 964.885 kb on - strand, within GFF894at 964.885 kb on - strand, within GFF894at 964.885 kb on - strand, within GFF894at 964.885 kb on - strand, within GFF894at 964.885 kb on - strand, within GFF894at 965.160 kb on - strandat 965.160 kb on - strandat 965.292 kb on + strandat 965.293 kb on - strandat 965.293 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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962,143 + +0.4
962,143 + +1.0
962,144 - -0.2
962,178 - +0.0
962,178 - +1.0
962,185 + +0.3
962,185 + -0.8
962,186 - +0.0
962,186 - -0.4
962,186 - -0.3
962,203 + -1.3
962,204 - +0.7
962,204 - -1.8
962,204 - +1.2
962,206 + -2.5
962,229 + +0.1
962,297 + +0.3
962,297 + -0.4
962,297 + +0.8
962,298 - -0.2
962,298 - -0.2
962,342 + GFF892 0.11 -0.8
962,343 - GFF892 0.11 +0.1
962,343 - GFF892 0.11 -0.6
962,388 - GFF892 0.17 -0.2
962,388 - GFF892 0.17 -0.2
962,388 - GFF892 0.17 +0.3
962,702 + GFF892 0.58 -1.9
962,703 - GFF892 0.58 -0.1
962,703 - GFF892 0.58 +0.9
962,751 - GFF892 0.64 -0.3
962,751 - GFF892 0.64 -0.5
962,756 + GFF892 0.65 -0.4
962,756 + GFF892 0.65 -0.6
962,756 + GFF892 0.65 +0.1
962,757 - GFF892 0.65 +0.7
962,757 - GFF892 0.65 +0.0
962,786 + GFF892 0.69 +0.3
962,786 + GFF892 0.69 +0.5
962,787 - GFF892 0.69 -0.2
962,787 - GFF892 0.69 +0.4
962,787 - GFF892 0.69 -0.6
962,918 + GFF892 0.86 +0.6
962,919 - GFF892 0.86 +0.1
962,925 - GFF892 0.87 -0.1
962,925 - GFF892 0.87 +0.1
962,928 - GFF892 0.87 -0.2
963,253 + GFF893 0.11 -0.2
963,253 + GFF893 0.11 +0.6
963,253 + GFF893 0.11 +0.5
963,254 - GFF893 0.11 -0.0
963,254 - GFF893 0.11 -0.4
963,254 - GFF893 0.11 -0.6
963,254 - GFF893 0.11 -0.7
963,254 - GFF893 0.11 +0.2
963,330 + GFF893 0.18 +0.5
963,331 - GFF893 0.18 +0.9
963,331 - GFF893 0.18 -1.4
963,331 - GFF893 0.18 -0.1
963,510 - GFF893 0.32 -1.1
963,970 + GFF893 0.70 +0.9
964,096 + GFF893 0.80 +0.5
964,097 - GFF893 0.81 +0.0
964,357 - +0.4
964,884 + GFF894 0.77 +0.4
964,884 + GFF894 0.77 -0.6
964,885 - GFF894 0.77 -0.3
964,885 - GFF894 0.77 -0.9
964,885 - GFF894 0.77 +0.5
964,885 - GFF894 0.77 +1.0
964,885 - GFF894 0.77 +0.4
964,885 - GFF894 0.77 +0.2
965,160 - +0.2
965,160 - +0.4
965,292 + -0.1
965,293 - -0.6
965,293 - +0.2

Or see this region's nucleotide sequence