Strain Fitness in Xanthobacter sp. DMC5 around GFF892

Experiment: Methanol and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF891 and GFF892 are separated by 110 nucleotidesGFF892 and GFF893 are separated by 86 nucleotides GFF891 - hypothetical protein, at 961,301 to 962,143 GFF891 GFF892 - queuosine precursor transporter, at 962,254 to 963,027 GFF892 GFF893 - 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD, at 963,114 to 964,334 GFF893 Position (kb) 962 963 964Strain fitness (log2 ratio) -2 -1 0 1 2at 961.346 kb on + strandat 961.347 kb on - strandat 961.367 kb on - strandat 961.399 kb on + strand, within GFF891at 961.400 kb on - strand, within GFF891at 961.430 kb on + strand, within GFF891at 961.430 kb on + strand, within GFF891at 961.430 kb on + strand, within GFF891at 961.431 kb on - strand, within GFF891at 961.436 kb on + strand, within GFF891at 961.437 kb on - strand, within GFF891at 961.437 kb on - strand, within GFF891at 961.440 kb on + strand, within GFF891at 961.441 kb on - strand, within GFF891at 961.441 kb on - strand, within GFF891at 961.485 kb on + strand, within GFF891at 961.485 kb on + strand, within GFF891at 961.485 kb on + strand, within GFF891at 961.486 kb on - strand, within GFF891at 961.486 kb on - strand, within GFF891at 961.487 kb on + strand, within GFF891at 961.583 kb on - strand, within GFF891at 961.583 kb on - strand, within GFF891at 961.583 kb on - strand, within GFF891at 961.651 kb on + strand, within GFF891at 961.652 kb on - strand, within GFF891at 961.652 kb on - strand, within GFF891at 961.659 kb on + strand, within GFF891at 961.659 kb on + strand, within GFF891at 961.659 kb on + strand, within GFF891at 961.807 kb on + strand, within GFF891at 961.808 kb on - strand, within GFF891at 961.808 kb on - strand, within GFF891at 961.808 kb on - strand, within GFF891at 961.808 kb on - strand, within GFF891at 961.833 kb on - strand, within GFF891at 961.855 kb on - strand, within GFF891at 961.872 kb on - strand, within GFF891at 961.872 kb on - strand, within GFF891at 961.965 kb on + strand, within GFF891at 961.965 kb on + strand, within GFF891at 961.965 kb on + strand, within GFF891at 962.055 kb on + strand, within GFF891at 962.055 kb on + strand, within GFF891at 962.073 kb on + strandat 962.074 kb on - strandat 962.074 kb on - strandat 962.102 kb on + strandat 962.103 kb on - strandat 962.104 kb on + strandat 962.105 kb on - strandat 962.105 kb on - strandat 962.106 kb on + strandat 962.143 kb on + strandat 962.143 kb on + strandat 962.144 kb on - strandat 962.178 kb on - strandat 962.178 kb on - strandat 962.185 kb on + strandat 962.185 kb on + strandat 962.186 kb on - strandat 962.186 kb on - strandat 962.186 kb on - strandat 962.203 kb on + strandat 962.204 kb on - strandat 962.204 kb on - strandat 962.204 kb on - strandat 962.206 kb on + strandat 962.229 kb on + strandat 962.297 kb on + strandat 962.297 kb on + strandat 962.297 kb on + strandat 962.298 kb on - strandat 962.298 kb on - strandat 962.342 kb on + strand, within GFF892at 962.343 kb on - strand, within GFF892at 962.343 kb on - strand, within GFF892at 962.388 kb on - strand, within GFF892at 962.388 kb on - strand, within GFF892at 962.388 kb on - strand, within GFF892at 962.702 kb on + strand, within GFF892at 962.703 kb on - strand, within GFF892at 962.703 kb on - strand, within GFF892at 962.751 kb on - strand, within GFF892at 962.751 kb on - strand, within GFF892at 962.756 kb on + strand, within GFF892at 962.756 kb on + strand, within GFF892at 962.756 kb on + strand, within GFF892at 962.757 kb on - strand, within GFF892at 962.757 kb on - strand, within GFF892at 962.786 kb on + strand, within GFF892at 962.786 kb on + strand, within GFF892at 962.787 kb on - strand, within GFF892at 962.787 kb on - strand, within GFF892at 962.787 kb on - strand, within GFF892at 962.918 kb on + strand, within GFF892at 962.919 kb on - strand, within GFF892at 962.925 kb on - strand, within GFF892at 962.925 kb on - strand, within GFF892at 962.928 kb on - strand, within GFF892at 963.253 kb on + strand, within GFF893at 963.253 kb on + strand, within GFF893at 963.253 kb on + strand, within GFF893at 963.254 kb on - strand, within GFF893at 963.254 kb on - strand, within GFF893at 963.254 kb on - strand, within GFF893at 963.254 kb on - strand, within GFF893at 963.254 kb on - strand, within GFF893at 963.330 kb on + strand, within GFF893at 963.331 kb on - strand, within GFF893at 963.331 kb on - strand, within GFF893at 963.331 kb on - strand, within GFF893at 963.510 kb on - strand, within GFF893at 963.970 kb on + strand, within GFF893

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
remove
961,346 + -0.3
961,347 - -0.0
961,367 - +0.9
961,399 + GFF891 0.12 +0.5
961,400 - GFF891 0.12 +1.6
961,430 + GFF891 0.15 +0.3
961,430 + GFF891 0.15 -0.2
961,430 + GFF891 0.15 -0.0
961,431 - GFF891 0.15 -0.4
961,436 + GFF891 0.16 +0.1
961,437 - GFF891 0.16 +0.0
961,437 - GFF891 0.16 +0.2
961,440 + GFF891 0.16 +0.8
961,441 - GFF891 0.17 -0.6
961,441 - GFF891 0.17 -0.0
961,485 + GFF891 0.22 -0.6
961,485 + GFF891 0.22 +0.6
961,485 + GFF891 0.22 -0.9
961,486 - GFF891 0.22 -0.4
961,486 - GFF891 0.22 -0.7
961,487 + GFF891 0.22 +0.0
961,583 - GFF891 0.33 +1.6
961,583 - GFF891 0.33 -0.4
961,583 - GFF891 0.33 +1.0
961,651 + GFF891 0.42 -0.1
961,652 - GFF891 0.42 -0.3
961,652 - GFF891 0.42 -0.8
961,659 + GFF891 0.42 -0.4
961,659 + GFF891 0.42 +1.1
961,659 + GFF891 0.42 +0.1
961,807 + GFF891 0.60 -0.1
961,808 - GFF891 0.60 +0.6
961,808 - GFF891 0.60 +0.5
961,808 - GFF891 0.60 -0.2
961,808 - GFF891 0.60 +0.8
961,833 - GFF891 0.63 +0.2
961,855 - GFF891 0.66 -0.4
961,872 - GFF891 0.68 +0.3
961,872 - GFF891 0.68 +1.9
961,965 + GFF891 0.79 +0.5
961,965 + GFF891 0.79 +1.4
961,965 + GFF891 0.79 +0.3
962,055 + GFF891 0.89 -0.1
962,055 + GFF891 0.89 -0.5
962,073 + +0.6
962,074 - -0.3
962,074 - -0.7
962,102 + -1.1
962,103 - +0.2
962,104 + -1.2
962,105 - -0.2
962,105 - -2.2
962,106 + +0.1
962,143 + +0.4
962,143 + +1.0
962,144 - -0.2
962,178 - +0.0
962,178 - +1.0
962,185 + +0.3
962,185 + -0.8
962,186 - +0.0
962,186 - -0.4
962,186 - -0.3
962,203 + -1.3
962,204 - +0.7
962,204 - -1.8
962,204 - +1.2
962,206 + -2.5
962,229 + +0.1
962,297 + +0.3
962,297 + -0.4
962,297 + +0.8
962,298 - -0.2
962,298 - -0.2
962,342 + GFF892 0.11 -0.8
962,343 - GFF892 0.11 +0.1
962,343 - GFF892 0.11 -0.6
962,388 - GFF892 0.17 -0.2
962,388 - GFF892 0.17 -0.2
962,388 - GFF892 0.17 +0.3
962,702 + GFF892 0.58 -1.9
962,703 - GFF892 0.58 -0.1
962,703 - GFF892 0.58 +0.9
962,751 - GFF892 0.64 -0.3
962,751 - GFF892 0.64 -0.5
962,756 + GFF892 0.65 -0.4
962,756 + GFF892 0.65 -0.6
962,756 + GFF892 0.65 +0.1
962,757 - GFF892 0.65 +0.7
962,757 - GFF892 0.65 +0.0
962,786 + GFF892 0.69 +0.3
962,786 + GFF892 0.69 +0.5
962,787 - GFF892 0.69 -0.2
962,787 - GFF892 0.69 +0.4
962,787 - GFF892 0.69 -0.6
962,918 + GFF892 0.86 +0.6
962,919 - GFF892 0.86 +0.1
962,925 - GFF892 0.87 -0.1
962,925 - GFF892 0.87 +0.1
962,928 - GFF892 0.87 -0.2
963,253 + GFF893 0.11 -0.2
963,253 + GFF893 0.11 +0.6
963,253 + GFF893 0.11 +0.5
963,254 - GFF893 0.11 -0.0
963,254 - GFF893 0.11 -0.4
963,254 - GFF893 0.11 -0.6
963,254 - GFF893 0.11 -0.7
963,254 - GFF893 0.11 +0.2
963,330 + GFF893 0.18 +0.5
963,331 - GFF893 0.18 +0.9
963,331 - GFF893 0.18 -1.4
963,331 - GFF893 0.18 -0.1
963,510 - GFF893 0.32 -1.1
963,970 + GFF893 0.70 +0.9

Or see this region's nucleotide sequence