Strain Fitness in Xanthobacter sp. DMC5 around GFF890

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF888 and GFF889 are separated by 99 nucleotidesGFF889 and GFF890 are separated by 66 nucleotidesGFF890 and GFF891 are separated by 331 nucleotides GFF888 - hypothetical protein, at 959,038 to 959,610 GFF888 GFF889 - NAD-dependent protein deacetylase, at 959,710 to 960,480 GFF889 GFF890 - Lactoylglutathione lyase, at 960,547 to 960,969 GFF890 GFF891 - hypothetical protein, at 961,301 to 962,143 GFF891 Position (kb) 960 961Strain fitness (log2 ratio) -1 0 1 2at 959.660 kb on + strandat 959.662 kb on - strandat 959.662 kb on - strandat 960.056 kb on + strand, within GFF889at 960.057 kb on - strand, within GFF889at 960.086 kb on + strand, within GFF889at 960.086 kb on + strand, within GFF889at 960.086 kb on + strand, within GFF889at 960.086 kb on + strand, within GFF889at 960.086 kb on + strand, within GFF889at 960.086 kb on + strand, within GFF889at 960.086 kb on + strand, within GFF889at 960.087 kb on - strand, within GFF889at 960.087 kb on - strand, within GFF889at 960.087 kb on - strand, within GFF889at 960.087 kb on - strand, within GFF889at 960.087 kb on - strand, within GFF889at 960.087 kb on - strand, within GFF889at 960.087 kb on - strand, within GFF889at 960.166 kb on - strand, within GFF889at 960.473 kb on + strandat 960.473 kb on + strandat 960.473 kb on + strandat 960.473 kb on + strandat 960.474 kb on - strandat 960.474 kb on - strandat 960.474 kb on - strandat 960.480 kb on + strandat 960.480 kb on + strandat 960.480 kb on + strandat 960.480 kb on + strandat 960.480 kb on + strandat 960.480 kb on + strandat 960.481 kb on - strandat 960.481 kb on - strandat 960.481 kb on - strandat 960.481 kb on - strandat 960.481 kb on - strandat 960.492 kb on + strandat 960.492 kb on + strandat 960.493 kb on - strandat 960.493 kb on - strandat 960.530 kb on + strandat 960.530 kb on + strandat 960.530 kb on + strandat 960.530 kb on + strandat 960.531 kb on - strandat 960.604 kb on + strand, within GFF890at 960.604 kb on + strand, within GFF890at 960.605 kb on - strand, within GFF890at 960.662 kb on - strand, within GFF890at 960.721 kb on + strand, within GFF890at 960.722 kb on - strand, within GFF890at 960.722 kb on - strand, within GFF890at 960.793 kb on + strand, within GFF890at 960.794 kb on - strand, within GFF890at 960.794 kb on - strand, within GFF890at 960.856 kb on + strand, within GFF890at 960.856 kb on + strand, within GFF890at 960.857 kb on - strand, within GFF890at 961.099 kb on + strandat 961.140 kb on + strandat 961.140 kb on + strandat 961.140 kb on + strandat 961.346 kb on + strandat 961.347 kb on - strandat 961.367 kb on - strandat 961.399 kb on + strand, within GFF891at 961.400 kb on - strand, within GFF891at 961.430 kb on + strand, within GFF891at 961.430 kb on + strand, within GFF891at 961.430 kb on + strand, within GFF891at 961.431 kb on - strand, within GFF891at 961.436 kb on + strand, within GFF891at 961.437 kb on - strand, within GFF891at 961.437 kb on - strand, within GFF891at 961.440 kb on + strand, within GFF891at 961.441 kb on - strand, within GFF891at 961.441 kb on - strand, within GFF891at 961.485 kb on + strand, within GFF891at 961.485 kb on + strand, within GFF891at 961.485 kb on + strand, within GFF891at 961.486 kb on - strand, within GFF891at 961.486 kb on - strand, within GFF891at 961.487 kb on + strand, within GFF891at 961.583 kb on - strand, within GFF891at 961.583 kb on - strand, within GFF891at 961.583 kb on - strand, within GFF891at 961.651 kb on + strand, within GFF891at 961.652 kb on - strand, within GFF891at 961.652 kb on - strand, within GFF891at 961.659 kb on + strand, within GFF891at 961.659 kb on + strand, within GFF891at 961.659 kb on + strand, within GFF891at 961.807 kb on + strand, within GFF891at 961.808 kb on - strand, within GFF891at 961.808 kb on - strand, within GFF891at 961.808 kb on - strand, within GFF891at 961.808 kb on - strand, within GFF891at 961.833 kb on - strand, within GFF891at 961.855 kb on - strand, within GFF891at 961.872 kb on - strand, within GFF891at 961.872 kb on - strand, within GFF891at 961.965 kb on + strand, within GFF891at 961.965 kb on + strand, within GFF891at 961.965 kb on + strand, within GFF891

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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959,660 + -1.0
959,662 - -0.9
959,662 - -0.5
960,056 + GFF889 0.45 +0.2
960,057 - GFF889 0.45 -0.5
960,086 + GFF889 0.49 +0.2
960,086 + GFF889 0.49 -0.2
960,086 + GFF889 0.49 -0.8
960,086 + GFF889 0.49 +0.1
960,086 + GFF889 0.49 +0.5
960,086 + GFF889 0.49 +0.1
960,086 + GFF889 0.49 +0.2
960,087 - GFF889 0.49 -0.1
960,087 - GFF889 0.49 +0.9
960,087 - GFF889 0.49 +1.1
960,087 - GFF889 0.49 -0.3
960,087 - GFF889 0.49 +0.8
960,087 - GFF889 0.49 +0.3
960,087 - GFF889 0.49 -0.1
960,166 - GFF889 0.59 +0.1
960,473 + +0.2
960,473 + -0.6
960,473 + -0.2
960,473 + -0.1
960,474 - +0.9
960,474 - +1.1
960,474 - +0.4
960,480 + +0.8
960,480 + -0.3
960,480 + -0.4
960,480 + +0.1
960,480 + +0.2
960,480 + -0.2
960,481 - +0.5
960,481 - +0.7
960,481 - -0.8
960,481 - -1.5
960,481 - +0.5
960,492 + -0.4
960,492 + -1.2
960,493 - +0.3
960,493 - +1.0
960,530 + -0.6
960,530 + +0.5
960,530 + -1.0
960,530 + +0.4
960,531 - +0.6
960,604 + GFF890 0.13 +0.6
960,604 + GFF890 0.13 -0.7
960,605 - GFF890 0.14 -1.6
960,662 - GFF890 0.27 -0.2
960,721 + GFF890 0.41 -0.1
960,722 - GFF890 0.41 +0.0
960,722 - GFF890 0.41 +0.3
960,793 + GFF890 0.58 -0.1
960,794 - GFF890 0.58 +0.2
960,794 - GFF890 0.58 -0.5
960,856 + GFF890 0.73 -0.8
960,856 + GFF890 0.73 -0.4
960,857 - GFF890 0.73 -0.4
961,099 + +0.2
961,140 + -0.3
961,140 + -0.5
961,140 + -0.8
961,346 + -0.3
961,347 - -0.0
961,367 - +0.9
961,399 + GFF891 0.12 +0.5
961,400 - GFF891 0.12 +1.6
961,430 + GFF891 0.15 +0.3
961,430 + GFF891 0.15 -0.2
961,430 + GFF891 0.15 -0.0
961,431 - GFF891 0.15 -0.4
961,436 + GFF891 0.16 +0.1
961,437 - GFF891 0.16 +0.0
961,437 - GFF891 0.16 +0.2
961,440 + GFF891 0.16 +0.8
961,441 - GFF891 0.17 -0.6
961,441 - GFF891 0.17 -0.0
961,485 + GFF891 0.22 -0.6
961,485 + GFF891 0.22 +0.6
961,485 + GFF891 0.22 -0.9
961,486 - GFF891 0.22 -0.4
961,486 - GFF891 0.22 -0.7
961,487 + GFF891 0.22 +0.0
961,583 - GFF891 0.33 +1.6
961,583 - GFF891 0.33 -0.4
961,583 - GFF891 0.33 +1.0
961,651 + GFF891 0.42 -0.1
961,652 - GFF891 0.42 -0.3
961,652 - GFF891 0.42 -0.8
961,659 + GFF891 0.42 -0.4
961,659 + GFF891 0.42 +1.1
961,659 + GFF891 0.42 +0.1
961,807 + GFF891 0.60 -0.1
961,808 - GFF891 0.60 +0.6
961,808 - GFF891 0.60 +0.5
961,808 - GFF891 0.60 -0.2
961,808 - GFF891 0.60 +0.8
961,833 - GFF891 0.63 +0.2
961,855 - GFF891 0.66 -0.4
961,872 - GFF891 0.68 +0.3
961,872 - GFF891 0.68 +1.9
961,965 + GFF891 0.79 +0.5
961,965 + GFF891 0.79 +1.4
961,965 + GFF891 0.79 +0.3

Or see this region's nucleotide sequence