Strain Fitness in Xanthobacter sp. DMC5 around GFF884

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF883 and GFF884 are separated by 557 nucleotidesGFF884 and GFF885 are separated by 54 nucleotidesGFF885 and GFF886 overlap by 4 nucleotides GFF883 - hypothetical protein, at 955,046 to 955,900 GFF883 GFF884 - hypothetical protein, at 956,458 to 957,294 GFF884 GFF885 - Chromate transport protein, at 957,349 to 957,966 GFF885 GFF886 - hypothetical protein, at 957,963 to 958,511 GFF886 Position (kb) 956 957 958Strain fitness (log2 ratio) -2 -1 0 1at 955.491 kb on + strand, within GFF883at 955.507 kb on - strand, within GFF883at 955.566 kb on + strand, within GFF883at 955.579 kb on + strand, within GFF883at 955.581 kb on + strand, within GFF883at 955.581 kb on + strand, within GFF883at 955.582 kb on - strand, within GFF883at 955.656 kb on - strand, within GFF883at 955.731 kb on + strand, within GFF883at 955.752 kb on + strand, within GFF883at 955.752 kb on + strand, within GFF883at 955.755 kb on - strand, within GFF883at 955.755 kb on - strand, within GFF883at 955.975 kb on + strandat 955.978 kb on + strandat 955.979 kb on - strandat 955.979 kb on - strandat 955.979 kb on - strandat 955.979 kb on - strandat 956.021 kb on - strandat 956.109 kb on + strandat 956.109 kb on + strandat 956.132 kb on - strandat 956.132 kb on - strandat 956.227 kb on + strandat 956.251 kb on - strandat 956.251 kb on - strandat 956.366 kb on + strandat 956.366 kb on + strandat 956.367 kb on - strandat 956.367 kb on - strandat 956.367 kb on - strandat 956.473 kb on + strandat 956.482 kb on + strandat 956.482 kb on + strandat 956.536 kb on + strandat 956.632 kb on + strand, within GFF884at 956.632 kb on + strand, within GFF884at 956.632 kb on + strand, within GFF884at 956.632 kb on + strand, within GFF884at 956.633 kb on - strand, within GFF884at 956.638 kb on - strand, within GFF884at 956.656 kb on + strand, within GFF884at 956.665 kb on + strand, within GFF884at 956.692 kb on + strand, within GFF884at 956.692 kb on + strand, within GFF884at 956.692 kb on + strand, within GFF884at 956.692 kb on + strand, within GFF884at 956.692 kb on + strand, within GFF884at 956.693 kb on - strand, within GFF884at 956.693 kb on - strand, within GFF884at 956.737 kb on + strand, within GFF884at 956.737 kb on + strand, within GFF884at 956.737 kb on + strand, within GFF884at 956.737 kb on + strand, within GFF884at 956.886 kb on + strand, within GFF884at 956.886 kb on + strand, within GFF884at 956.887 kb on - strand, within GFF884at 957.052 kb on + strand, within GFF884at 957.052 kb on + strand, within GFF884at 957.053 kb on - strand, within GFF884at 957.053 kb on - strand, within GFF884at 957.053 kb on - strand, within GFF884at 957.053 kb on - strand, within GFF884at 957.053 kb on - strand, within GFF884at 957.145 kb on + strand, within GFF884at 957.145 kb on + strand, within GFF884at 957.146 kb on - strand, within GFF884at 957.256 kb on + strandat 957.256 kb on + strandat 957.257 kb on - strandat 957.257 kb on - strandat 957.257 kb on - strandat 957.293 kb on - strandat 957.496 kb on + strand, within GFF885at 957.497 kb on - strand, within GFF885at 957.548 kb on + strand, within GFF885at 957.600 kb on + strand, within GFF885at 957.600 kb on + strand, within GFF885at 957.600 kb on + strand, within GFF885at 957.600 kb on + strand, within GFF885at 957.600 kb on + strand, within GFF885at 957.600 kb on + strand, within GFF885at 957.600 kb on + strand, within GFF885at 957.601 kb on - strand, within GFF885at 957.601 kb on - strand, within GFF885at 957.601 kb on - strand, within GFF885at 957.709 kb on + strand, within GFF885at 957.710 kb on - strand, within GFF885at 957.710 kb on - strand, within GFF885at 957.710 kb on - strand, within GFF885at 957.931 kb on + strandat 957.931 kb on + strandat 958.116 kb on + strand, within GFF886at 958.116 kb on + strand, within GFF886at 958.116 kb on + strand, within GFF886at 958.116 kb on + strand, within GFF886at 958.116 kb on + strand, within GFF886at 958.116 kb on + strand, within GFF886at 958.116 kb on + strand, within GFF886at 958.116 kb on + strand, within GFF886at 958.116 kb on + strand, within GFF886at 958.116 kb on + strand, within GFF886at 958.117 kb on - strand, within GFF886at 958.117 kb on - strand, within GFF886at 958.117 kb on - strand, within GFF886at 958.117 kb on - strand, within GFF886at 958.173 kb on + strand, within GFF886

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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955,491 + GFF883 0.52 +0.3
955,507 - GFF883 0.54 -0.2
955,566 + GFF883 0.61 +0.1
955,579 + GFF883 0.62 +0.3
955,581 + GFF883 0.63 +0.3
955,581 + GFF883 0.63 -0.5
955,582 - GFF883 0.63 +0.4
955,656 - GFF883 0.71 +1.0
955,731 + GFF883 0.80 -0.7
955,752 + GFF883 0.83 +0.1
955,752 + GFF883 0.83 -0.0
955,755 - GFF883 0.83 -0.4
955,755 - GFF883 0.83 -0.7
955,975 + -0.2
955,978 + -0.2
955,979 - -1.6
955,979 - -0.0
955,979 - -0.8
955,979 - -0.7
956,021 - +0.0
956,109 + -1.2
956,109 + -0.8
956,132 - -0.6
956,132 - +0.0
956,227 + +0.2
956,251 - +0.8
956,251 - -0.5
956,366 + +0.7
956,366 + -0.4
956,367 - +0.7
956,367 - -1.2
956,367 - +0.4
956,473 + -0.3
956,482 + +1.0
956,482 + +0.8
956,536 + -0.6
956,632 + GFF884 0.21 +0.4
956,632 + GFF884 0.21 -0.3
956,632 + GFF884 0.21 +0.5
956,632 + GFF884 0.21 -0.0
956,633 - GFF884 0.21 +1.1
956,638 - GFF884 0.22 -0.7
956,656 + GFF884 0.24 +0.3
956,665 + GFF884 0.25 +0.4
956,692 + GFF884 0.28 +0.1
956,692 + GFF884 0.28 -0.2
956,692 + GFF884 0.28 +0.5
956,692 + GFF884 0.28 -0.1
956,692 + GFF884 0.28 +0.1
956,693 - GFF884 0.28 -0.7
956,693 - GFF884 0.28 -0.8
956,737 + GFF884 0.33 -0.3
956,737 + GFF884 0.33 -0.4
956,737 + GFF884 0.33 +0.2
956,737 + GFF884 0.33 +1.2
956,886 + GFF884 0.51 -1.3
956,886 + GFF884 0.51 -0.1
956,887 - GFF884 0.51 +0.3
957,052 + GFF884 0.71 +0.8
957,052 + GFF884 0.71 +1.1
957,053 - GFF884 0.71 +0.7
957,053 - GFF884 0.71 +0.0
957,053 - GFF884 0.71 -0.6
957,053 - GFF884 0.71 -0.5
957,053 - GFF884 0.71 +0.1
957,145 + GFF884 0.82 -0.3
957,145 + GFF884 0.82 +0.5
957,146 - GFF884 0.82 -1.8
957,256 + +0.2
957,256 + +0.4
957,257 - -0.5
957,257 - -0.7
957,257 - -0.2
957,293 - -0.5
957,496 + GFF885 0.24 -0.3
957,497 - GFF885 0.24 +0.0
957,548 + GFF885 0.32 -1.4
957,600 + GFF885 0.41 +0.4
957,600 + GFF885 0.41 +1.4
957,600 + GFF885 0.41 +0.4
957,600 + GFF885 0.41 -0.6
957,600 + GFF885 0.41 -0.8
957,600 + GFF885 0.41 +0.1
957,600 + GFF885 0.41 -1.9
957,601 - GFF885 0.41 -0.7
957,601 - GFF885 0.41 -0.0
957,601 - GFF885 0.41 -0.3
957,709 + GFF885 0.58 +0.2
957,710 - GFF885 0.58 +0.6
957,710 - GFF885 0.58 -0.6
957,710 - GFF885 0.58 -0.0
957,931 + -1.8
957,931 + +1.1
958,116 + GFF886 0.28 +0.4
958,116 + GFF886 0.28 -0.1
958,116 + GFF886 0.28 -1.2
958,116 + GFF886 0.28 -0.8
958,116 + GFF886 0.28 -0.3
958,116 + GFF886 0.28 -0.4
958,116 + GFF886 0.28 -0.1
958,116 + GFF886 0.28 -1.2
958,116 + GFF886 0.28 +0.0
958,116 + GFF886 0.28 +0.5
958,117 - GFF886 0.28 +0.3
958,117 - GFF886 0.28 -0.5
958,117 - GFF886 0.28 +1.3
958,117 - GFF886 0.28 +0.6
958,173 + GFF886 0.38 -0.3

Or see this region's nucleotide sequence