Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF880 and GFF881 are separated by 508 nucleotides GFF881 and GFF882 are separated by 212 nucleotides GFF882 and GFF883 are separated by 188 nucleotides
GFF880 - hypothetical protein, at 952,818 to 953,705
GFF880
GFF881 - hypothetical protein, at 954,214 to 954,360
GFF881
GFF882 - hypothetical protein, at 954,573 to 954,857
GFF882
GFF883 - hypothetical protein, at 955,046 to 955,900
GFF883
Position (kb) 954
955 Strain fitness (log2 ratio) -2
-1
0
1 at 953.610 kb on - strand, within GFF880 at 953.610 kb on - strand, within GFF880 at 953.668 kb on - strand at 953.668 kb on - strand at 953.668 kb on - strand at 953.668 kb on - strand at 953.714 kb on + strand at 953.714 kb on + strand at 953.714 kb on + strand at 953.743 kb on - strand at 953.745 kb on - strand at 953.794 kb on + strand at 954.081 kb on + strand at 954.287 kb on + strand, within GFF881 at 954.288 kb on - strand, within GFF881 at 954.297 kb on - strand, within GFF881 at 954.341 kb on + strand, within GFF881 at 954.341 kb on + strand, within GFF881 at 954.445 kb on - strand at 954.445 kb on - strand at 954.445 kb on - strand at 954.512 kb on + strand at 954.585 kb on - strand at 954.660 kb on + strand, within GFF882 at 954.660 kb on + strand, within GFF882 at 954.660 kb on + strand, within GFF882 at 954.661 kb on - strand, within GFF882 at 954.661 kb on - strand, within GFF882 at 954.661 kb on - strand, within GFF882 at 954.856 kb on - strand at 955.047 kb on + strand at 955.047 kb on + strand at 955.048 kb on - strand at 955.140 kb on + strand, within GFF883 at 955.152 kb on + strand, within GFF883 at 955.152 kb on + strand, within GFF883 at 955.170 kb on + strand, within GFF883 at 955.171 kb on - strand, within GFF883 at 955.200 kb on + strand, within GFF883 at 955.201 kb on - strand, within GFF883 at 955.276 kb on - strand, within GFF883 at 955.278 kb on + strand, within GFF883 at 955.279 kb on - strand, within GFF883 at 955.357 kb on + strand, within GFF883 at 955.357 kb on + strand, within GFF883 at 955.358 kb on - strand, within GFF883 at 955.358 kb on - strand, within GFF883 at 955.358 kb on - strand, within GFF883 at 955.358 kb on - strand, within GFF883 at 955.425 kb on + strand, within GFF883 at 955.425 kb on + strand, within GFF883 at 955.426 kb on - strand, within GFF883 at 955.491 kb on + strand, within GFF883 at 955.507 kb on - strand, within GFF883 at 955.566 kb on + strand, within GFF883 at 955.579 kb on + strand, within GFF883 at 955.581 kb on + strand, within GFF883 at 955.581 kb on + strand, within GFF883 at 955.582 kb on - strand, within GFF883 at 955.656 kb on - strand, within GFF883 at 955.731 kb on + strand, within GFF883 at 955.752 kb on + strand, within GFF883 at 955.752 kb on + strand, within GFF883 at 955.755 kb on - strand, within GFF883 at 955.755 kb on - strand, within GFF883
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 953,610 - GFF880 0.89 -0.4 953,610 - GFF880 0.89 -0.0 953,668 - +0.7 953,668 - -1.0 953,668 - +0.3 953,668 - +1.4 953,714 + -0.6 953,714 + +0.4 953,714 + -0.7 953,743 - -0.3 953,745 - -0.8 953,794 + -0.3 954,081 + +0.0 954,287 + GFF881 0.50 -0.2 954,288 - GFF881 0.50 +0.7 954,297 - GFF881 0.56 -0.5 954,341 + GFF881 0.86 +0.3 954,341 + GFF881 0.86 +0.8 954,445 - +0.1 954,445 - -1.3 954,445 - -1.0 954,512 + -2.2 954,585 - -1.4 954,660 + GFF882 0.31 -0.0 954,660 + GFF882 0.31 -1.2 954,660 + GFF882 0.31 +0.7 954,661 - GFF882 0.31 -0.7 954,661 - GFF882 0.31 -0.1 954,661 - GFF882 0.31 +0.4 954,856 - +0.0 955,047 + -0.1 955,047 + -0.3 955,048 - -0.6 955,140 + GFF883 0.11 -2.4 955,152 + GFF883 0.12 +0.0 955,152 + GFF883 0.12 -0.1 955,170 + GFF883 0.15 +0.3 955,171 - GFF883 0.15 -0.4 955,200 + GFF883 0.18 -0.5 955,201 - GFF883 0.18 -0.7 955,276 - GFF883 0.27 -0.4 955,278 + GFF883 0.27 -0.1 955,279 - GFF883 0.27 -0.1 955,357 + GFF883 0.36 -0.8 955,357 + GFF883 0.36 -2.1 955,358 - GFF883 0.36 -1.4 955,358 - GFF883 0.36 -0.3 955,358 - GFF883 0.36 -0.5 955,358 - GFF883 0.36 +0.2 955,425 + GFF883 0.44 +0.7 955,425 + GFF883 0.44 -1.1 955,426 - GFF883 0.44 -1.9 955,491 + GFF883 0.52 +0.3 955,507 - GFF883 0.54 -0.2 955,566 + GFF883 0.61 +0.1 955,579 + GFF883 0.62 +0.3 955,581 + GFF883 0.63 +0.3 955,581 + GFF883 0.63 -0.5 955,582 - GFF883 0.63 +0.4 955,656 - GFF883 0.71 +1.0 955,731 + GFF883 0.80 -0.7 955,752 + GFF883 0.83 +0.1 955,752 + GFF883 0.83 -0.0 955,755 - GFF883 0.83 -0.4 955,755 - GFF883 0.83 -0.7
Or see this region's nucleotide sequence