Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF875 and GFF876 are separated by 50 nucleotides GFF876 and GFF877 overlap by 14 nucleotides GFF877 and GFF878 are separated by 283 nucleotides GFF878 and GFF879 overlap by 14 nucleotides
GFF875 - hypothetical protein, at 946,627 to 947,445
GFF875
GFF876 - hypothetical protein, at 947,496 to 947,729
GFF876
GFF877 - hypothetical protein, at 947,716 to 948,012
GFF877
GFF878 - hypothetical protein, at 948,296 to 948,436
GFF878
GFF879 - hypothetical protein, at 948,423 to 950,276
GFF879
Position (kb) 947
948
949 Strain fitness (log2 ratio) -1
0
1 at 946.824 kb on + strand, within GFF875 at 946.846 kb on + strand, within GFF875 at 946.847 kb on - strand, within GFF875 at 946.847 kb on - strand, within GFF875 at 946.930 kb on + strand, within GFF875 at 946.930 kb on + strand, within GFF875 at 946.930 kb on + strand, within GFF875 at 946.930 kb on + strand, within GFF875 at 946.931 kb on - strand, within GFF875 at 946.944 kb on + strand, within GFF875 at 946.984 kb on + strand, within GFF875 at 946.984 kb on + strand, within GFF875 at 947.158 kb on + strand, within GFF875 at 947.160 kb on + strand, within GFF875 at 947.160 kb on + strand, within GFF875 at 947.160 kb on + strand, within GFF875 at 947.160 kb on + strand, within GFF875 at 947.161 kb on - strand, within GFF875 at 947.161 kb on - strand, within GFF875 at 947.161 kb on - strand, within GFF875 at 947.161 kb on - strand, within GFF875 at 947.169 kb on + strand, within GFF875 at 947.169 kb on + strand, within GFF875 at 947.239 kb on + strand, within GFF875 at 947.239 kb on + strand, within GFF875 at 947.239 kb on + strand, within GFF875 at 947.239 kb on + strand, within GFF875 at 947.481 kb on + strand at 947.481 kb on + strand at 947.481 kb on + strand at 947.482 kb on - strand at 947.482 kb on - strand at 947.605 kb on + strand, within GFF876 at 947.606 kb on - strand, within GFF876 at 947.898 kb on - strand, within GFF877 at 947.935 kb on - strand, within GFF877 at 947.935 kb on - strand, within GFF877 at 948.023 kb on - strand at 948.025 kb on - strand at 948.025 kb on - strand at 948.145 kb on + strand at 948.146 kb on - strand at 948.185 kb on + strand at 948.212 kb on - strand at 948.225 kb on + strand at 948.330 kb on + strand, within GFF878 at 948.330 kb on + strand, within GFF878 at 948.396 kb on + strand, within GFF878 at 948.405 kb on + strand, within GFF878 at 948.559 kb on + strand at 948.559 kb on + strand at 948.646 kb on + strand, within GFF879 at 948.711 kb on + strand, within GFF879 at 948.793 kb on - strand, within GFF879 at 948.793 kb on - strand, within GFF879 at 948.876 kb on - strand, within GFF879 at 948.876 kb on - strand, within GFF879 at 948.918 kb on - strand, within GFF879
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 946,824 + GFF875 0.24 +0.2 946,846 + GFF875 0.27 -0.6 946,847 - GFF875 0.27 +0.7 946,847 - GFF875 0.27 -0.0 946,930 + GFF875 0.37 -0.8 946,930 + GFF875 0.37 +0.4 946,930 + GFF875 0.37 -0.9 946,930 + GFF875 0.37 -1.1 946,931 - GFF875 0.37 +0.1 946,944 + GFF875 0.39 +0.8 946,984 + GFF875 0.44 -1.2 946,984 + GFF875 0.44 -1.2 947,158 + GFF875 0.65 -0.6 947,160 + GFF875 0.65 -0.1 947,160 + GFF875 0.65 -0.8 947,160 + GFF875 0.65 +0.4 947,160 + GFF875 0.65 +0.4 947,161 - GFF875 0.65 +0.8 947,161 - GFF875 0.65 -0.1 947,161 - GFF875 0.65 -0.6 947,161 - GFF875 0.65 +0.2 947,169 + GFF875 0.66 +0.4 947,169 + GFF875 0.66 +0.2 947,239 + GFF875 0.75 +0.0 947,239 + GFF875 0.75 -0.5 947,239 + GFF875 0.75 -0.9 947,239 + GFF875 0.75 +0.9 947,481 + +0.1 947,481 + +1.0 947,481 + -0.3 947,482 - -0.1 947,482 - +0.1 947,605 + GFF876 0.47 -0.4 947,606 - GFF876 0.47 +0.1 947,898 - GFF877 0.61 -0.8 947,935 - GFF877 0.74 +0.7 947,935 - GFF877 0.74 -1.6 948,023 - +0.6 948,025 - -1.1 948,025 - +0.3 948,145 + -0.6 948,146 - +0.3 948,185 + -0.5 948,212 - -1.2 948,225 + -0.8 948,330 + GFF878 0.24 -0.1 948,330 + GFF878 0.24 +0.6 948,396 + GFF878 0.71 +0.4 948,405 + GFF878 0.77 -0.8 948,559 + +0.7 948,559 + -0.9 948,646 + GFF879 0.12 -0.5 948,711 + GFF879 0.16 -0.3 948,793 - GFF879 0.20 +0.3 948,793 - GFF879 0.20 -1.4 948,876 - GFF879 0.24 -0.8 948,876 - GFF879 0.24 +0.4 948,918 - GFF879 0.27 -0.3
Or see this region's nucleotide sequence