Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF800 and GFF801 overlap by 4 nucleotides GFF801 and GFF802 overlap by 4 nucleotides GFF802 and GFF803 are separated by 1 nucleotides
GFF800 - Oligopeptide transport ATP-binding protein OppD, at 853,641 to 854,663
GFF800
GFF801 - Glutathione transport system permease protein GsiD, at 854,660 to 855,577
GFF801
GFF802 - Glutathione transport system permease protein GsiC, at 855,574 to 856,575
GFF802
GFF803 - Periplasmic dipeptide transport protein, at 856,577 to 858,190
GFF803
Position (kb) 854
855
856 Strain fitness (log2 ratio) -2
-1
0
1
2 at 853.969 kb on + strand, within GFF800 at 853.969 kb on + strand, within GFF800 at 853.969 kb on + strand, within GFF800 at 853.969 kb on + strand, within GFF800 at 853.969 kb on + strand, within GFF800 at 853.969 kb on + strand, within GFF800 at 853.969 kb on + strand, within GFF800 at 853.970 kb on - strand, within GFF800 at 853.970 kb on - strand, within GFF800 at 853.970 kb on - strand, within GFF800 at 854.766 kb on + strand, within GFF801 at 854.766 kb on + strand, within GFF801 at 854.766 kb on + strand, within GFF801 at 854.767 kb on - strand, within GFF801 at 854.767 kb on - strand, within GFF801 at 854.930 kb on + strand, within GFF801 at 854.930 kb on + strand, within GFF801 at 854.930 kb on + strand, within GFF801 at 854.931 kb on - strand, within GFF801 at 854.931 kb on - strand, within GFF801 at 854.931 kb on - strand, within GFF801 at 855.091 kb on + strand, within GFF801 at 855.092 kb on - strand, within GFF801 at 855.190 kb on - strand, within GFF801 at 855.608 kb on + strand at 855.746 kb on + strand, within GFF802 at 855.932 kb on + strand, within GFF802 at 855.933 kb on - strand, within GFF802 at 855.944 kb on + strand, within GFF802 at 855.945 kb on - strand, within GFF802 at 855.973 kb on + strand, within GFF802 at 855.973 kb on + strand, within GFF802 at 855.974 kb on - strand, within GFF802 at 856.015 kb on - strand, within GFF802 at 856.264 kb on + strand, within GFF802 at 856.264 kb on + strand, within GFF802 at 856.264 kb on + strand, within GFF802 at 856.264 kb on + strand, within GFF802 at 856.265 kb on - strand, within GFF802 at 856.265 kb on - strand, within GFF802 at 856.265 kb on - strand, within GFF802 at 856.335 kb on - strand, within GFF802 at 856.335 kb on - strand, within GFF802 at 856.397 kb on + strand, within GFF802 at 856.397 kb on + strand, within GFF802 at 856.397 kb on + strand, within GFF802 at 856.398 kb on - strand, within GFF802 at 856.532 kb on + strand at 856.533 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 853,969 + GFF800 0.32 -0.3 853,969 + GFF800 0.32 +0.6 853,969 + GFF800 0.32 -1.5 853,969 + GFF800 0.32 +0.5 853,969 + GFF800 0.32 +0.8 853,969 + GFF800 0.32 -0.9 853,969 + GFF800 0.32 -0.6 853,970 - GFF800 0.32 -0.8 853,970 - GFF800 0.32 +0.7 853,970 - GFF800 0.32 +0.2 854,766 + GFF801 0.12 +0.7 854,766 + GFF801 0.12 -1.0 854,766 + GFF801 0.12 -0.5 854,767 - GFF801 0.12 -0.1 854,767 - GFF801 0.12 +0.4 854,930 + GFF801 0.29 +0.0 854,930 + GFF801 0.29 -0.2 854,930 + GFF801 0.29 +1.9 854,931 - GFF801 0.30 -0.7 854,931 - GFF801 0.30 +0.9 854,931 - GFF801 0.30 -0.7 855,091 + GFF801 0.47 -0.2 855,092 - GFF801 0.47 -0.4 855,190 - GFF801 0.58 +0.0 855,608 + -2.4 855,746 + GFF802 0.17 -0.4 855,932 + GFF802 0.36 +0.2 855,933 - GFF802 0.36 -0.7 855,944 + GFF802 0.37 +0.7 855,945 - GFF802 0.37 -0.3 855,973 + GFF802 0.40 +0.2 855,973 + GFF802 0.40 -0.1 855,974 - GFF802 0.40 +0.3 856,015 - GFF802 0.44 -0.4 856,264 + GFF802 0.69 +0.3 856,264 + GFF802 0.69 +0.4 856,264 + GFF802 0.69 +0.0 856,264 + GFF802 0.69 -0.5 856,265 - GFF802 0.69 -0.6 856,265 - GFF802 0.69 -0.3 856,265 - GFF802 0.69 -0.4 856,335 - GFF802 0.76 +0.1 856,335 - GFF802 0.76 +1.6 856,397 + GFF802 0.82 +0.9 856,397 + GFF802 0.82 -0.1 856,397 + GFF802 0.82 -0.5 856,398 - GFF802 0.82 -0.4 856,532 + -0.4 856,533 - +0.6
Or see this region's nucleotide sequence