Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF768 and GFF769 are separated by 10 nucleotides GFF769 and GFF770 overlap by 4 nucleotides GFF770 and GFF771 are separated by 20 nucleotides
GFF768 - Nitrilotriacetate monooxygenase component A, at 820,726 to 822,057
GFF768
GFF769 - hypothetical protein, at 822,068 to 822,526
GFF769
GFF770 - Aliphatic sulfonates import ATP-binding protein SsuB, at 822,523 to 823,308
GFF770
GFF771 - Putative aliphatic sulfonates transport permease protein SsuC, at 823,329 to 824,180
GFF771
Position (kb) 822
823 Strain fitness (log2 ratio) -1
0
1 at 821.085 kb on + strand, within GFF768 at 821.085 kb on + strand, within GFF768 at 821.085 kb on + strand, within GFF768 at 821.085 kb on + strand, within GFF768 at 821.086 kb on - strand, within GFF768 at 821.086 kb on - strand, within GFF768 at 821.086 kb on - strand, within GFF768 at 821.086 kb on - strand, within GFF768 at 821.086 kb on - strand, within GFF768 at 821.127 kb on + strand, within GFF768 at 821.206 kb on + strand, within GFF768 at 821.206 kb on + strand, within GFF768 at 821.206 kb on + strand, within GFF768 at 821.207 kb on - strand, within GFF768 at 821.279 kb on - strand, within GFF768 at 821.279 kb on - strand, within GFF768 at 821.483 kb on - strand, within GFF768 at 821.986 kb on + strand at 821.986 kb on + strand at 822.077 kb on - strand at 822.089 kb on + strand at 822.089 kb on + strand at 822.090 kb on - strand at 822.090 kb on - strand at 822.090 kb on - strand at 822.090 kb on - strand at 822.213 kb on + strand, within GFF769 at 822.213 kb on + strand, within GFF769 at 822.214 kb on - strand, within GFF769 at 822.243 kb on + strand, within GFF769 at 822.244 kb on - strand, within GFF769 at 822.244 kb on - strand, within GFF769 at 822.244 kb on - strand, within GFF769 at 822.261 kb on + strand, within GFF769 at 822.262 kb on - strand, within GFF769 at 822.321 kb on + strand, within GFF769 at 822.322 kb on - strand, within GFF769 at 822.322 kb on - strand, within GFF769 at 822.381 kb on + strand, within GFF769 at 822.382 kb on - strand, within GFF769 at 822.393 kb on + strand, within GFF769 at 822.393 kb on + strand, within GFF769 at 822.394 kb on - strand, within GFF769 at 822.512 kb on + strand at 822.512 kb on + strand at 822.513 kb on - strand at 822.792 kb on + strand, within GFF770 at 823.118 kb on + strand, within GFF770 at 823.119 kb on - strand, within GFF770 at 823.119 kb on - strand, within GFF770 at 823.119 kb on - strand, within GFF770 at 823.119 kb on - strand, within GFF770 at 823.119 kb on - strand, within GFF770 at 823.262 kb on + strand at 823.262 kb on + strand at 823.262 kb on + strand at 823.263 kb on - strand at 823.263 kb on - strand at 823.263 kb on - strand at 823.263 kb on - strand at 823.263 kb on - strand at 823.316 kb on - strand at 823.340 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 821,085 + GFF768 0.27 -0.3 821,085 + GFF768 0.27 -0.7 821,085 + GFF768 0.27 -0.1 821,085 + GFF768 0.27 -0.7 821,086 - GFF768 0.27 +0.2 821,086 - GFF768 0.27 -0.1 821,086 - GFF768 0.27 +0.5 821,086 - GFF768 0.27 +1.2 821,086 - GFF768 0.27 -0.8 821,127 + GFF768 0.30 +1.0 821,206 + GFF768 0.36 +0.5 821,206 + GFF768 0.36 +0.1 821,206 + GFF768 0.36 +0.3 821,207 - GFF768 0.36 -0.2 821,279 - GFF768 0.42 -0.6 821,279 - GFF768 0.42 +0.1 821,483 - GFF768 0.57 -0.3 821,986 + -0.2 821,986 + +0.3 822,077 - +1.1 822,089 + +0.9 822,089 + +0.0 822,090 - +0.9 822,090 - +1.6 822,090 - -0.7 822,090 - +0.7 822,213 + GFF769 0.32 +0.3 822,213 + GFF769 0.32 -0.7 822,214 - GFF769 0.32 -0.6 822,243 + GFF769 0.38 -0.4 822,244 - GFF769 0.38 -0.6 822,244 - GFF769 0.38 -0.9 822,244 - GFF769 0.38 -0.9 822,261 + GFF769 0.42 +1.4 822,262 - GFF769 0.42 +0.2 822,321 + GFF769 0.55 +1.2 822,322 - GFF769 0.55 +0.1 822,322 - GFF769 0.55 +1.3 822,381 + GFF769 0.68 -0.4 822,382 - GFF769 0.68 +0.2 822,393 + GFF769 0.71 +0.4 822,393 + GFF769 0.71 -0.8 822,394 - GFF769 0.71 +0.7 822,512 + +0.1 822,512 + -0.4 822,513 - -0.3 822,792 + GFF770 0.34 -0.5 823,118 + GFF770 0.76 +0.2 823,119 - GFF770 0.76 -0.6 823,119 - GFF770 0.76 -0.4 823,119 - GFF770 0.76 -0.3 823,119 - GFF770 0.76 -0.2 823,119 - GFF770 0.76 -0.6 823,262 + +0.6 823,262 + -1.0 823,262 + -0.3 823,263 - +1.2 823,263 - -0.3 823,263 - -0.6 823,263 - +1.6 823,263 - +1.3 823,316 - -0.3 823,340 - +0.1
Or see this region's nucleotide sequence