Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF703 and GFF704 are separated by 83 nucleotides GFF704 and GFF705 are separated by 90 nucleotides GFF705 and GFF706 are separated by 198 nucleotides GFF706 and GFF707 are separated by 1 nucleotides
GFF703 - hypothetical protein, at 751,076 to 752,545
GFF703
GFF704 - Short-chain-enoyl-CoA hydratase, at 752,629 to 753,453
GFF704
GFF705 - hypothetical protein, at 753,544 to 753,999
GFF705
GFF706 - 50S ribosomal protein L13, at 754,198 to 754,659
GFF706
GFF707 - 30S ribosomal protein S9, at 754,661 to 755,140
GFF707
Position (kb) 753
754 Strain fitness (log2 ratio) -1
0
1 at 752.621 kb on - strand at 752.630 kb on + strand at 752.631 kb on - strand at 752.676 kb on + strand at 752.729 kb on + strand, within GFF704 at 752.736 kb on - strand, within GFF704 at 752.736 kb on - strand, within GFF704 at 752.768 kb on + strand, within GFF704 at 752.768 kb on + strand, within GFF704 at 753.000 kb on + strand, within GFF704 at 753.177 kb on - strand, within GFF704 at 753.501 kb on - strand at 753.501 kb on - strand at 753.769 kb on + strand, within GFF705 at 753.770 kb on - strand, within GFF705 at 753.921 kb on + strand, within GFF705 at 753.971 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 752,621 - +0.1 752,630 + -0.3 752,631 - +1.0 752,676 + -0.8 752,729 + GFF704 0.12 +0.6 752,736 - GFF704 0.13 -0.5 752,736 - GFF704 0.13 +0.3 752,768 + GFF704 0.17 -0.0 752,768 + GFF704 0.17 -0.9 753,000 + GFF704 0.45 -1.6 753,177 - GFF704 0.66 -1.3 753,501 - +0.8 753,501 - -0.3 753,769 + GFF705 0.49 -1.0 753,770 - GFF705 0.50 -1.3 753,921 + GFF705 0.83 -0.3 753,971 - +0.3
Or see this region's nucleotide sequence