Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF615 and GFF616 are separated by 194 nucleotides GFF616 and GFF617 overlap by 4 nucleotides GFF617 and GFF618 are separated by 62 nucleotides
GFF615 - Ubiquinone hydroxylase UbiL, at 654,390 to 655,568
GFF615
GFF616 - hypothetical protein, at 655,763 to 656,518
GFF616
GFF617 - putative oxidoreductase YgfF, at 656,515 to 657,270
GFF617
GFF618 - Quinone oxidoreductase 1, at 657,333 to 658,313
GFF618
Position (kb) 655
656
657 Strain fitness (log2 ratio) -1
0
1 at 656.411 kb on + strand, within GFF616 at 656.411 kb on + strand, within GFF616 at 656.411 kb on + strand, within GFF616 at 656.412 kb on - strand, within GFF616 at 656.412 kb on - strand, within GFF616 at 656.412 kb on - strand, within GFF616 at 656.417 kb on + strand, within GFF616 at 656.417 kb on + strand, within GFF616 at 656.418 kb on - strand, within GFF616 at 656.418 kb on - strand, within GFF616 at 656.621 kb on - strand, within GFF617 at 656.621 kb on - strand, within GFF617 at 656.735 kb on - strand, within GFF617 at 656.983 kb on + strand, within GFF617 at 656.993 kb on - strand, within GFF617 at 657.229 kb on + strand at 657.229 kb on + strand at 657.229 kb on + strand at 657.231 kb on + strand at 657.232 kb on - strand at 657.299 kb on + strand at 657.299 kb on + strand at 657.299 kb on + strand at 657.299 kb on + strand at 657.300 kb on - strand at 657.492 kb on + strand, within GFF618 at 657.492 kb on + strand, within GFF618
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 656,411 + GFF616 0.86 -0.4 656,411 + GFF616 0.86 +0.8 656,411 + GFF616 0.86 -0.9 656,412 - GFF616 0.86 +0.3 656,412 - GFF616 0.86 -0.6 656,412 - GFF616 0.86 -1.5 656,417 + GFF616 0.87 -0.8 656,417 + GFF616 0.87 -0.3 656,418 - GFF616 0.87 +0.6 656,418 - GFF616 0.87 -0.5 656,621 - GFF617 0.14 +0.1 656,621 - GFF617 0.14 +0.7 656,735 - GFF617 0.29 +1.4 656,983 + GFF617 0.62 +0.8 656,993 - GFF617 0.63 -0.4 657,229 + +0.7 657,229 + +0.1 657,229 + +0.1 657,231 + +0.1 657,232 - +0.1 657,299 + -0.6 657,299 + +0.7 657,299 + -1.3 657,299 + -0.7 657,300 - +0.2 657,492 + GFF618 0.16 +0.1 657,492 + GFF618 0.16 +1.0
Or see this region's nucleotide sequence