Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF612 and GFF613 are separated by 140 nucleotides GFF613 and GFF614 are separated by 94 nucleotides
GFF612 - Malyl-CoA/beta-methylmalyl-CoA/citramalyl-CoA lyase, at 651,325 to 652,365
GFF612
GFF613 - hypothetical protein, at 652,506 to 653,321
GFF613
GFF614 - hypothetical protein, at 653,416 to 654,372
GFF614
Position (kb) 652
653
654 Strain fitness (log2 ratio) -2
-1
0
1 at 651.641 kb on + strand, within GFF612 at 651.694 kb on - strand, within GFF612 at 651.762 kb on - strand, within GFF612 at 651.974 kb on + strand, within GFF612 at 651.975 kb on - strand, within GFF612 at 652.110 kb on + strand, within GFF612 at 652.311 kb on - strand at 652.400 kb on - strand at 652.436 kb on - strand at 652.725 kb on + strand, within GFF613 at 652.726 kb on - strand, within GFF613 at 652.897 kb on - strand, within GFF613 at 652.977 kb on + strand, within GFF613 at 652.977 kb on + strand, within GFF613 at 652.978 kb on - strand, within GFF613 at 653.055 kb on + strand, within GFF613 at 653.055 kb on + strand, within GFF613 at 653.055 kb on + strand, within GFF613 at 653.055 kb on + strand, within GFF613 at 653.056 kb on - strand, within GFF613 at 653.056 kb on - strand, within GFF613 at 653.057 kb on + strand, within GFF613 at 653.057 kb on + strand, within GFF613 at 653.267 kb on + strand at 653.274 kb on + strand at 653.275 kb on - strand at 653.359 kb on - strand at 653.536 kb on + strand, within GFF614 at 653.536 kb on + strand, within GFF614 at 653.536 kb on + strand, within GFF614 at 653.536 kb on + strand, within GFF614 at 653.537 kb on - strand, within GFF614 at 653.537 kb on - strand, within GFF614 at 653.560 kb on + strand, within GFF614 at 653.560 kb on + strand, within GFF614 at 653.689 kb on - strand, within GFF614 at 653.726 kb on - strand, within GFF614 at 653.740 kb on + strand, within GFF614 at 653.741 kb on - strand, within GFF614 at 653.741 kb on - strand, within GFF614 at 653.820 kb on + strand, within GFF614 at 654.189 kb on + strand, within GFF614 at 654.190 kb on - strand, within GFF614 at 654.190 kb on - strand, within GFF614 at 654.190 kb on - strand, within GFF614
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 651,641 + GFF612 0.30 +0.5 651,694 - GFF612 0.35 -0.2 651,762 - GFF612 0.42 +0.2 651,974 + GFF612 0.62 -0.6 651,975 - GFF612 0.62 +0.6 652,110 + GFF612 0.75 -0.5 652,311 - -0.2 652,400 - +1.2 652,436 - -0.7 652,725 + GFF613 0.27 -2.3 652,726 - GFF613 0.27 -0.4 652,897 - GFF613 0.48 -0.4 652,977 + GFF613 0.58 +1.4 652,977 + GFF613 0.58 -0.1 652,978 - GFF613 0.58 -0.4 653,055 + GFF613 0.67 -1.2 653,055 + GFF613 0.67 +0.3 653,055 + GFF613 0.67 -0.3 653,055 + GFF613 0.67 -0.6 653,056 - GFF613 0.67 +0.6 653,056 - GFF613 0.67 -0.1 653,057 + GFF613 0.68 -0.4 653,057 + GFF613 0.68 -0.0 653,267 + -0.2 653,274 + -0.8 653,275 - -0.4 653,359 - +0.3 653,536 + GFF614 0.13 -0.0 653,536 + GFF614 0.13 -0.6 653,536 + GFF614 0.13 -1.8 653,536 + GFF614 0.13 +0.3 653,537 - GFF614 0.13 -0.2 653,537 - GFF614 0.13 +0.3 653,560 + GFF614 0.15 +0.4 653,560 + GFF614 0.15 -0.6 653,689 - GFF614 0.29 +0.2 653,726 - GFF614 0.32 -0.6 653,740 + GFF614 0.34 +0.3 653,741 - GFF614 0.34 -0.0 653,741 - GFF614 0.34 -0.0 653,820 + GFF614 0.42 +0.6 654,189 + GFF614 0.81 +0.8 654,190 - GFF614 0.81 -0.6 654,190 - GFF614 0.81 -0.8 654,190 - GFF614 0.81 -0.9
Or see this region's nucleotide sequence