Strain Fitness in Xanthobacter sp. DMC5 around GFF551

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF549 and GFF550 overlap by 4 nucleotidesGFF550 and GFF551 are separated by 144 nucleotidesGFF551 and GFF552 are separated by 4 nucleotidesGFF552 and GFF553 overlap by 4 nucleotides GFF549 - hypothetical protein, at 590,586 to 591,839 GFF549 GFF550 - hypothetical protein, at 591,836 to 592,222 GFF550 GFF551 - Beta-hexosaminidase, at 592,367 to 593,380 GFF551 GFF552 - Segregation and condensation protein A, at 593,385 to 594,254 GFF552 GFF553 - Segregation and condensation protein B, at 594,251 to 594,994 GFF553 Position (kb) 592 593 594Strain fitness (log2 ratio) -1 0 1at 591.752 kb on - strandat 591.978 kb on + strand, within GFF550at 592.061 kb on - strand, within GFF550at 592.215 kb on + strandat 592.215 kb on + strandat 592.216 kb on - strandat 592.216 kb on - strandat 592.262 kb on + strandat 592.355 kb on + strandat 592.706 kb on + strand, within GFF551at 593.024 kb on + strand, within GFF551at 593.024 kb on + strand, within GFF551

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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591,752 - +0.4
591,978 + GFF550 0.37 -0.2
592,061 - GFF550 0.58 -0.8
592,215 + +1.5
592,215 + +0.5
592,216 - -0.1
592,216 - -0.6
592,262 + +0.2
592,355 + -0.5
592,706 + GFF551 0.33 -0.5
593,024 + GFF551 0.65 -0.5
593,024 + GFF551 0.65 -0.2

Or see this region's nucleotide sequence