Strain Fitness in Xanthobacter sp. DMC5 around GFF513

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF512 and GFF513 are separated by 197 nucleotidesGFF513 and GFF514 are separated by 213 nucleotides GFF512 - Multidrug resistance protein MdtC, at 542,445 to 545,603 GFF512 GFF513 - hypothetical protein, at 545,801 to 547,882 GFF513 GFF514 - hypothetical protein, at 548,096 to 550,147 GFF514 Position (kb) 545 546 547 548Strain fitness (log2 ratio) -2 -1 0 1 2at 545.061 kb on + strand, within GFF512at 545.061 kb on + strand, within GFF512at 545.061 kb on + strand, within GFF512at 545.061 kb on + strand, within GFF512at 545.061 kb on + strand, within GFF512at 545.061 kb on + strand, within GFF512at 545.062 kb on - strand, within GFF512at 545.062 kb on - strand, within GFF512at 545.062 kb on - strand, within GFF512at 545.062 kb on - strand, within GFF512at 545.082 kb on + strand, within GFF512at 545.083 kb on - strand, within GFF512at 545.083 kb on - strand, within GFF512at 545.083 kb on - strand, within GFF512at 545.481 kb on + strandat 545.481 kb on + strandat 545.481 kb on + strandat 545.482 kb on - strandat 545.482 kb on - strandat 545.482 kb on - strandat 545.487 kb on + strandat 545.488 kb on - strandat 545.488 kb on - strandat 545.543 kb on + strandat 545.544 kb on - strandat 545.544 kb on - strandat 545.641 kb on + strandat 545.642 kb on - strandat 545.642 kb on - strandat 545.681 kb on + strandat 545.681 kb on + strandat 545.681 kb on + strandat 545.682 kb on - strandat 545.813 kb on + strandat 545.813 kb on + strandat 545.957 kb on + strandat 545.958 kb on - strandat 545.999 kb on + strandat 546.000 kb on - strandat 546.071 kb on + strand, within GFF513at 546.071 kb on + strand, within GFF513at 546.071 kb on + strand, within GFF513at 546.072 kb on - strand, within GFF513at 546.072 kb on - strand, within GFF513at 546.072 kb on - strand, within GFF513at 546.135 kb on - strand, within GFF513at 546.167 kb on + strand, within GFF513at 546.233 kb on + strand, within GFF513at 546.236 kb on + strand, within GFF513at 546.237 kb on - strand, within GFF513at 546.237 kb on - strand, within GFF513at 546.353 kb on + strand, within GFF513at 546.533 kb on + strand, within GFF513at 546.534 kb on - strand, within GFF513at 546.534 kb on - strand, within GFF513at 546.539 kb on + strand, within GFF513at 546.539 kb on + strand, within GFF513at 546.539 kb on + strand, within GFF513at 546.540 kb on - strand, within GFF513at 546.602 kb on + strand, within GFF513at 546.603 kb on - strand, within GFF513at 546.603 kb on - strand, within GFF513at 546.603 kb on - strand, within GFF513at 546.629 kb on + strand, within GFF513at 546.665 kb on + strand, within GFF513at 546.665 kb on + strand, within GFF513at 546.683 kb on + strand, within GFF513at 546.693 kb on - strand, within GFF513at 546.693 kb on - strand, within GFF513at 546.731 kb on + strand, within GFF513at 546.731 kb on + strand, within GFF513at 546.731 kb on + strand, within GFF513at 546.731 kb on + strand, within GFF513at 546.731 kb on + strand, within GFF513at 546.731 kb on + strand, within GFF513at 546.732 kb on - strand, within GFF513at 546.732 kb on - strand, within GFF513at 546.732 kb on - strand, within GFF513at 546.732 kb on - strand, within GFF513at 546.732 kb on - strand, within GFF513at 546.732 kb on - strand, within GFF513at 546.734 kb on - strand, within GFF513at 546.753 kb on - strand, within GFF513at 546.753 kb on - strand, within GFF513at 546.813 kb on - strand, within GFF513at 546.813 kb on - strand, within GFF513at 546.983 kb on - strand, within GFF513at 547.053 kb on - strand, within GFF513at 547.100 kb on + strand, within GFF513at 547.100 kb on + strand, within GFF513at 547.100 kb on + strand, within GFF513at 547.100 kb on + strand, within GFF513at 547.101 kb on - strand, within GFF513at 547.101 kb on - strand, within GFF513at 547.101 kb on - strand, within GFF513at 547.402 kb on + strand, within GFF513at 547.403 kb on - strand, within GFF513at 547.742 kb on + strandat 547.742 kb on + strandat 547.742 kb on + strandat 547.880 kb on + strandat 547.880 kb on + strandat 547.880 kb on + strandat 547.880 kb on + strandat 547.880 kb on + strandat 548.160 kb on + strandat 548.160 kb on + strandat 548.161 kb on - strandat 548.161 kb on - strandat 548.161 kb on - strandat 548.161 kb on - strandat 548.185 kb on + strandat 548.294 kb on + strandat 548.397 kb on - strand, within GFF514at 548.397 kb on - strand, within GFF514at 548.518 kb on - strand, within GFF514at 548.531 kb on + strand, within GFF514at 548.532 kb on - strand, within GFF514at 548.532 kb on - strand, within GFF514at 548.532 kb on - strand, within GFF514at 548.532 kb on - strand, within GFF514at 548.624 kb on + strand, within GFF514at 548.624 kb on + strand, within GFF514at 548.625 kb on - strand, within GFF514at 548.630 kb on + strand, within GFF514at 548.802 kb on + strand, within GFF514at 548.811 kb on - strand, within GFF514

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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545,061 + GFF512 0.83 -1.0
545,061 + GFF512 0.83 +0.8
545,061 + GFF512 0.83 +0.5
545,061 + GFF512 0.83 +0.7
545,061 + GFF512 0.83 +0.1
545,061 + GFF512 0.83 +0.2
545,062 - GFF512 0.83 +0.5
545,062 - GFF512 0.83 -0.0
545,062 - GFF512 0.83 -1.1
545,062 - GFF512 0.83 +0.6
545,082 + GFF512 0.83 -0.9
545,083 - GFF512 0.84 -0.1
545,083 - GFF512 0.84 +0.5
545,083 - GFF512 0.84 +0.9
545,481 + +0.5
545,481 + -0.2
545,481 + +0.1
545,482 - +0.6
545,482 - -0.2
545,482 - -0.1
545,487 + +0.3
545,488 - -0.2
545,488 - +0.3
545,543 + +1.7
545,544 - -0.6
545,544 - -0.1
545,641 + -0.5
545,642 - -1.1
545,642 - +0.0
545,681 + -0.6
545,681 + +0.5
545,681 + -0.2
545,682 - -0.4
545,813 + -0.4
545,813 + -0.1
545,957 + +0.6
545,958 - -0.2
545,999 + -0.6
546,000 - -0.4
546,071 + GFF513 0.13 +0.2
546,071 + GFF513 0.13 +0.8
546,071 + GFF513 0.13 +0.1
546,072 - GFF513 0.13 +0.9
546,072 - GFF513 0.13 +0.1
546,072 - GFF513 0.13 +0.5
546,135 - GFF513 0.16 +0.6
546,167 + GFF513 0.18 -0.7
546,233 + GFF513 0.21 -0.1
546,236 + GFF513 0.21 +0.2
546,237 - GFF513 0.21 +0.4
546,237 - GFF513 0.21 +0.7
546,353 + GFF513 0.27 +0.4
546,533 + GFF513 0.35 +0.1
546,534 - GFF513 0.35 -0.8
546,534 - GFF513 0.35 +0.1
546,539 + GFF513 0.35 +0.6
546,539 + GFF513 0.35 +1.6
546,539 + GFF513 0.35 +0.1
546,540 - GFF513 0.35 -0.8
546,602 + GFF513 0.38 +0.8
546,603 - GFF513 0.39 -0.4
546,603 - GFF513 0.39 -1.3
546,603 - GFF513 0.39 +1.0
546,629 + GFF513 0.40 -0.1
546,665 + GFF513 0.41 +0.0
546,665 + GFF513 0.41 +0.6
546,683 + GFF513 0.42 -0.4
546,693 - GFF513 0.43 -0.1
546,693 - GFF513 0.43 -1.5
546,731 + GFF513 0.45 +2.1
546,731 + GFF513 0.45 +1.6
546,731 + GFF513 0.45 +0.3
546,731 + GFF513 0.45 -0.2
546,731 + GFF513 0.45 -1.4
546,731 + GFF513 0.45 -0.6
546,732 - GFF513 0.45 -0.1
546,732 - GFF513 0.45 +0.3
546,732 - GFF513 0.45 +0.2
546,732 - GFF513 0.45 -0.2
546,732 - GFF513 0.45 +1.7
546,732 - GFF513 0.45 +1.2
546,734 - GFF513 0.45 +0.4
546,753 - GFF513 0.46 -0.1
546,753 - GFF513 0.46 +0.4
546,813 - GFF513 0.49 -0.0
546,813 - GFF513 0.49 -0.1
546,983 - GFF513 0.57 -1.0
547,053 - GFF513 0.60 -0.8
547,100 + GFF513 0.62 +0.0
547,100 + GFF513 0.62 +0.4
547,100 + GFF513 0.62 -0.3
547,100 + GFF513 0.62 +0.3
547,101 - GFF513 0.62 -0.2
547,101 - GFF513 0.62 -0.7
547,101 - GFF513 0.62 +0.7
547,402 + GFF513 0.77 +0.6
547,403 - GFF513 0.77 +0.7
547,742 + -0.0
547,742 + -0.6
547,742 + -0.2
547,880 + -0.3
547,880 + +0.0
547,880 + -0.2
547,880 + -0.7
547,880 + +0.2
548,160 + +0.6
548,160 + -0.5
548,161 - +0.2
548,161 - +0.7
548,161 - -0.6
548,161 - +0.1
548,185 + -0.5
548,294 + -0.1
548,397 - GFF514 0.15 -0.5
548,397 - GFF514 0.15 -0.2
548,518 - GFF514 0.21 +0.5
548,531 + GFF514 0.21 +0.0
548,532 - GFF514 0.21 -0.5
548,532 - GFF514 0.21 +0.0
548,532 - GFF514 0.21 +0.7
548,532 - GFF514 0.21 +0.4
548,624 + GFF514 0.26 +0.3
548,624 + GFF514 0.26 -0.6
548,625 - GFF514 0.26 +0.4
548,630 + GFF514 0.26 -1.7
548,802 + GFF514 0.34 -0.7
548,811 - GFF514 0.35 -1.8

Or see this region's nucleotide sequence