Strain Fitness in Xanthobacter sp. DMC5 around GFF4909

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4907 and GFF4908 overlap by 4 nucleotidesGFF4908 and GFF4909 are separated by 78 nucleotidesGFF4909 and GFF4910 are separated by 2 nucleotides GFF4907 - hypothetical protein, at 11,359 to 12,033 GFF4907 GFF4908 - hypothetical protein, at 12,030 to 12,323 GFF4908 GFF4909 - hypothetical protein, at 12,402 to 12,977 GFF4909 GFF4910 - hypothetical protein, at 12,980 to 14,923 GFF4910 Position (kb) 12 13Strain fitness (log2 ratio) -1 0 1 2at 11.444 kb on + strand, within GFF4907at 11.444 kb on + strand, within GFF4907at 11.445 kb on - strand, within GFF4907at 11.445 kb on - strand, within GFF4907at 11.510 kb on + strand, within GFF4907at 11.510 kb on + strand, within GFF4907at 11.511 kb on - strand, within GFF4907at 11.511 kb on - strand, within GFF4907at 11.511 kb on - strand, within GFF4907at 11.511 kb on - strand, within GFF4907at 11.600 kb on + strand, within GFF4907at 11.600 kb on + strand, within GFF4907at 11.600 kb on + strand, within GFF4907at 11.600 kb on + strand, within GFF4907at 11.601 kb on - strand, within GFF4907at 11.601 kb on - strand, within GFF4907at 11.601 kb on - strand, within GFF4907at 11.601 kb on - strand, within GFF4907at 11.601 kb on - strand, within GFF4907at 11.666 kb on + strand, within GFF4907at 11.667 kb on - strand, within GFF4907at 11.667 kb on - strand, within GFF4907at 11.852 kb on + strand, within GFF4907at 11.852 kb on + strand, within GFF4907at 11.852 kb on + strand, within GFF4907at 11.852 kb on + strand, within GFF4907at 11.852 kb on + strand, within GFF4907at 11.852 kb on + strand, within GFF4907at 11.852 kb on + strand, within GFF4907at 11.852 kb on + strand, within GFF4907at 11.852 kb on + strand, within GFF4907at 11.852 kb on + strand, within GFF4907at 11.852 kb on + strand, within GFF4907at 11.852 kb on + strand, within GFF4907at 11.852 kb on + strand, within GFF4907at 11.853 kb on - strand, within GFF4907at 11.853 kb on - strand, within GFF4907at 11.853 kb on - strand, within GFF4907at 11.873 kb on + strand, within GFF4907at 11.873 kb on + strand, within GFF4907at 11.874 kb on - strand, within GFF4907at 11.874 kb on - strand, within GFF4907at 11.874 kb on - strand, within GFF4907at 12.014 kb on + strandat 12.037 kb on - strandat 12.154 kb on + strand, within GFF4908at 12.154 kb on + strand, within GFF4908at 12.154 kb on + strand, within GFF4908at 12.155 kb on - strand, within GFF4908at 12.296 kb on + strandat 12.296 kb on + strandat 12.296 kb on + strandat 12.297 kb on - strandat 12.340 kb on + strandat 12.475 kb on + strand, within GFF4909at 12.476 kb on - strand, within GFF4909at 12.476 kb on - strand, within GFF4909at 12.566 kb on + strand, within GFF4909at 13.043 kb on + strandat 13.044 kb on - strandat 13.120 kb on - strandat 13.300 kb on + strand, within GFF4910at 13.300 kb on + strand, within GFF4910at 13.301 kb on - strand, within GFF4910at 13.414 kb on - strand, within GFF4910at 13.519 kb on - strand, within GFF4910at 13.572 kb on + strand, within GFF4910at 13.573 kb on - strand, within GFF4910at 13.657 kb on - strand, within GFF4910at 13.692 kb on + strand, within GFF4910at 13.692 kb on + strand, within GFF4910at 13.692 kb on + strand, within GFF4910at 13.692 kb on + strand, within GFF4910at 13.693 kb on - strand, within GFF4910at 13.736 kb on - strand, within GFF4910at 13.736 kb on - strand, within GFF4910at 13.737 kb on + strand, within GFF4910at 13.737 kb on + strand, within GFF4910at 13.791 kb on + strand, within GFF4910at 13.791 kb on + strand, within GFF4910at 13.792 kb on - strand, within GFF4910at 13.936 kb on - strand, within GFF4910at 13.938 kb on + strand, within GFF4910

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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11,444 + GFF4907 0.13 +0.3
11,444 + GFF4907 0.13 +0.4
11,445 - GFF4907 0.13 -1.4
11,445 - GFF4907 0.13 +0.6
11,510 + GFF4907 0.22 -0.9
11,510 + GFF4907 0.22 -0.0
11,511 - GFF4907 0.23 -1.4
11,511 - GFF4907 0.23 -1.0
11,511 - GFF4907 0.23 -0.4
11,511 - GFF4907 0.23 -0.3
11,600 + GFF4907 0.36 +0.6
11,600 + GFF4907 0.36 -0.1
11,600 + GFF4907 0.36 -0.3
11,600 + GFF4907 0.36 +0.6
11,601 - GFF4907 0.36 +0.6
11,601 - GFF4907 0.36 -1.6
11,601 - GFF4907 0.36 +0.2
11,601 - GFF4907 0.36 +0.6
11,601 - GFF4907 0.36 +0.6
11,666 + GFF4907 0.45 -0.2
11,667 - GFF4907 0.46 -0.3
11,667 - GFF4907 0.46 +0.9
11,852 + GFF4907 0.73 +1.0
11,852 + GFF4907 0.73 +0.4
11,852 + GFF4907 0.73 -0.1
11,852 + GFF4907 0.73 -0.9
11,852 + GFF4907 0.73 +0.1
11,852 + GFF4907 0.73 +1.3
11,852 + GFF4907 0.73 +0.4
11,852 + GFF4907 0.73 +2.0
11,852 + GFF4907 0.73 -0.1
11,852 + GFF4907 0.73 +0.1
11,852 + GFF4907 0.73 +0.7
11,852 + GFF4907 0.73 +0.2
11,852 + GFF4907 0.73 -1.5
11,853 - GFF4907 0.73 +0.1
11,853 - GFF4907 0.73 -0.9
11,853 - GFF4907 0.73 +1.2
11,873 + GFF4907 0.76 +0.3
11,873 + GFF4907 0.76 +0.5
11,874 - GFF4907 0.76 -0.2
11,874 - GFF4907 0.76 -0.8
11,874 - GFF4907 0.76 +0.4
12,014 + +0.2
12,037 - -0.7
12,154 + GFF4908 0.42 -0.4
12,154 + GFF4908 0.42 -0.0
12,154 + GFF4908 0.42 +0.5
12,155 - GFF4908 0.43 +0.3
12,296 + -0.4
12,296 + -0.6
12,296 + -0.7
12,297 - +0.2
12,340 + +0.3
12,475 + GFF4909 0.13 -0.8
12,476 - GFF4909 0.13 +0.1
12,476 - GFF4909 0.13 +0.2
12,566 + GFF4909 0.28 +0.5
13,043 + -0.6
13,044 - -0.3
13,120 - +0.6
13,300 + GFF4910 0.16 +0.3
13,300 + GFF4910 0.16 -0.3
13,301 - GFF4910 0.17 -0.1
13,414 - GFF4910 0.22 +1.0
13,519 - GFF4910 0.28 +0.3
13,572 + GFF4910 0.30 -0.5
13,573 - GFF4910 0.31 -0.8
13,657 - GFF4910 0.35 -0.2
13,692 + GFF4910 0.37 -0.6
13,692 + GFF4910 0.37 +0.6
13,692 + GFF4910 0.37 -0.4
13,692 + GFF4910 0.37 -0.7
13,693 - GFF4910 0.37 +1.0
13,736 - GFF4910 0.39 -0.2
13,736 - GFF4910 0.39 +0.2
13,737 + GFF4910 0.39 -1.4
13,737 + GFF4910 0.39 +0.4
13,791 + GFF4910 0.42 -1.5
13,791 + GFF4910 0.42 +0.5
13,792 - GFF4910 0.42 +0.4
13,936 - GFF4910 0.49 -0.3
13,938 + GFF4910 0.49 +0.1

Or see this region's nucleotide sequence