Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF489 and GFF490 are separated by 845 nucleotides GFF490 and GFF491 overlap by 4 nucleotides
GFF489 - hypothetical protein, at 518,196 to 519,932
GFF489
GFF490 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 520,778 to 521,482
GFF490
GFF491 - Vitamin B12 import ATP-binding protein BtuD, at 521,479 to 523,233
GFF491
Position (kb) 520
521
522 Strain fitness (log2 ratio) -1
0
1 at 519.936 kb on + strand at 519.936 kb on + strand at 519.937 kb on - strand at 520.128 kb on + strand at 520.128 kb on + strand at 520.128 kb on + strand at 520.128 kb on + strand at 520.128 kb on + strand at 520.129 kb on - strand at 520.129 kb on - strand at 520.129 kb on - strand at 520.129 kb on - strand at 520.195 kb on - strand at 520.208 kb on + strand at 520.209 kb on - strand at 520.309 kb on + strand at 520.309 kb on + strand at 520.310 kb on - strand at 520.326 kb on + strand at 520.381 kb on + strand at 520.382 kb on - strand at 520.382 kb on - strand at 520.534 kb on + strand at 520.535 kb on - strand at 520.535 kb on - strand at 520.613 kb on + strand at 520.614 kb on - strand at 520.614 kb on - strand at 520.780 kb on - strand at 520.788 kb on + strand at 520.788 kb on + strand at 520.789 kb on - strand at 520.883 kb on - strand, within GFF490 at 521.461 kb on - strand at 521.789 kb on + strand, within GFF491 at 521.789 kb on + strand, within GFF491 at 521.790 kb on - strand, within GFF491 at 521.790 kb on - strand, within GFF491 at 522.115 kb on - strand, within GFF491 at 522.178 kb on - strand, within GFF491 at 522.206 kb on + strand, within GFF491 at 522.207 kb on - strand, within GFF491 at 522.207 kb on - strand, within GFF491 at 522.383 kb on + strand, within GFF491 at 522.383 kb on + strand, within GFF491 at 522.383 kb on + strand, within GFF491 at 522.383 kb on + strand, within GFF491 at 522.384 kb on - strand, within GFF491
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 519,936 + +0.4 519,936 + -0.4 519,937 - -0.7 520,128 + -0.3 520,128 + +0.6 520,128 + -0.1 520,128 + +0.4 520,128 + -0.2 520,129 - -0.2 520,129 - -1.4 520,129 - -0.9 520,129 - +0.9 520,195 - +1.0 520,208 + -0.1 520,209 - -0.4 520,309 + +0.6 520,309 + -0.1 520,310 - -0.8 520,326 + -0.1 520,381 + +1.1 520,382 - -1.2 520,382 - -0.2 520,534 + +0.7 520,535 - -0.5 520,535 - +0.2 520,613 + +0.4 520,614 - -0.4 520,614 - +0.2 520,780 - -1.3 520,788 + -0.0 520,788 + +0.1 520,789 - -0.1 520,883 - GFF490 0.15 +0.3 521,461 - +0.5 521,789 + GFF491 0.18 -0.0 521,789 + GFF491 0.18 -1.2 521,790 - GFF491 0.18 -0.5 521,790 - GFF491 0.18 -0.3 522,115 - GFF491 0.36 -0.5 522,178 - GFF491 0.40 -0.2 522,206 + GFF491 0.41 -1.1 522,207 - GFF491 0.41 -0.2 522,207 - GFF491 0.41 -0.9 522,383 + GFF491 0.52 +0.4 522,383 + GFF491 0.52 -0.4 522,383 + GFF491 0.52 +0.1 522,383 + GFF491 0.52 +1.0 522,384 - GFF491 0.52 +0.6
Or see this region's nucleotide sequence