Strain Fitness in Xanthobacter sp. DMC5 around GFF4834

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4833 and GFF4834 overlap by 1 nucleotidesGFF4834 and GFF4835 overlap by 8 nucleotidesGFF4835 and GFF4836 are separated by 44 nucleotides GFF4833 - Adaptive-response sensory-kinase SasA, at 72,207 to 73,943 GFF4833 GFF4834 - Regulatory protein AtoC, at 73,943 to 75,337 GFF4834 GFF4835 - hypothetical protein, at 75,330 to 76,175 GFF4835 GFF4836 - Divalent metal cation transporter MntH, at 76,220 to 77,530 GFF4836 Position (kb) 73 74 75 76Strain fitness (log2 ratio) -2 -1 0 1at 73.156 kb on - strand, within GFF4833at 73.156 kb on - strand, within GFF4833at 73.239 kb on - strand, within GFF4833at 73.239 kb on - strand, within GFF4833at 73.467 kb on + strand, within GFF4833at 73.467 kb on + strand, within GFF4833at 73.467 kb on + strand, within GFF4833at 73.468 kb on - strand, within GFF4833at 73.624 kb on - strand, within GFF4833at 73.771 kb on + strandat 73.771 kb on + strandat 73.771 kb on + strandat 73.772 kb on - strandat 73.951 kb on + strandat 73.952 kb on - strandat 73.965 kb on + strandat 73.965 kb on + strandat 73.966 kb on - strandat 73.966 kb on - strandat 73.966 kb on - strandat 74.073 kb on - strandat 74.144 kb on - strand, within GFF4834at 74.198 kb on + strand, within GFF4834at 74.198 kb on + strand, within GFF4834at 74.198 kb on + strand, within GFF4834at 74.198 kb on + strand, within GFF4834at 74.198 kb on + strand, within GFF4834at 74.199 kb on - strand, within GFF4834at 74.199 kb on - strand, within GFF4834at 74.199 kb on - strand, within GFF4834at 74.199 kb on - strand, within GFF4834at 74.249 kb on + strand, within GFF4834at 74.249 kb on + strand, within GFF4834at 74.250 kb on - strand, within GFF4834at 74.250 kb on - strand, within GFF4834at 74.250 kb on - strand, within GFF4834at 74.250 kb on - strand, within GFF4834at 74.507 kb on + strand, within GFF4834at 74.507 kb on + strand, within GFF4834at 74.508 kb on - strand, within GFF4834at 74.852 kb on + strand, within GFF4834at 74.852 kb on + strand, within GFF4834at 74.852 kb on + strand, within GFF4834at 74.853 kb on - strand, within GFF4834at 74.853 kb on - strand, within GFF4834at 74.853 kb on - strand, within GFF4834at 74.853 kb on - strand, within GFF4834at 75.012 kb on - strand, within GFF4834at 75.087 kb on + strand, within GFF4834at 75.087 kb on + strand, within GFF4834at 75.087 kb on + strand, within GFF4834at 75.087 kb on + strand, within GFF4834at 75.087 kb on + strand, within GFF4834at 75.088 kb on - strand, within GFF4834at 75.166 kb on + strand, within GFF4834at 75.167 kb on - strand, within GFF4834at 75.199 kb on - strandat 75.335 kb on + strandat 75.335 kb on + strandat 75.336 kb on - strandat 75.336 kb on - strandat 75.517 kb on - strand, within GFF4835at 75.517 kb on - strand, within GFF4835at 75.747 kb on + strand, within GFF4835at 75.758 kb on - strand, within GFF4835at 75.918 kb on + strand, within GFF4835at 76.020 kb on + strand, within GFF4835at 76.021 kb on - strand, within GFF4835at 76.021 kb on - strand, within GFF4835at 76.027 kb on + strand, within GFF4835at 76.027 kb on + strand, within GFF4835at 76.027 kb on + strand, within GFF4835at 76.028 kb on - strand, within GFF4835at 76.028 kb on - strand, within GFF4835at 76.053 kb on + strand, within GFF4835at 76.053 kb on + strand, within GFF4835at 76.054 kb on - strand, within GFF4835at 76.142 kb on - strandat 76.221 kb on + strandat 76.241 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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73,156 - GFF4833 0.55 +1.0
73,156 - GFF4833 0.55 +0.7
73,239 - GFF4833 0.59 -1.2
73,239 - GFF4833 0.59 -0.2
73,467 + GFF4833 0.73 +1.2
73,467 + GFF4833 0.73 -1.4
73,467 + GFF4833 0.73 -0.1
73,468 - GFF4833 0.73 +0.0
73,624 - GFF4833 0.82 +0.0
73,771 + +0.8
73,771 + -0.1
73,771 + +0.3
73,772 - +0.5
73,951 + +0.7
73,952 - +0.1
73,965 + +0.4
73,965 + -0.6
73,966 - +0.9
73,966 - +0.0
73,966 - -0.4
74,073 - +0.1
74,144 - GFF4834 0.14 -0.8
74,198 + GFF4834 0.18 +1.0
74,198 + GFF4834 0.18 +0.2
74,198 + GFF4834 0.18 +0.1
74,198 + GFF4834 0.18 -0.0
74,198 + GFF4834 0.18 -0.8
74,199 - GFF4834 0.18 -0.2
74,199 - GFF4834 0.18 -0.0
74,199 - GFF4834 0.18 +1.2
74,199 - GFF4834 0.18 +1.4
74,249 + GFF4834 0.22 +0.3
74,249 + GFF4834 0.22 -0.5
74,250 - GFF4834 0.22 -0.1
74,250 - GFF4834 0.22 +0.3
74,250 - GFF4834 0.22 +1.4
74,250 - GFF4834 0.22 -1.8
74,507 + GFF4834 0.40 +0.1
74,507 + GFF4834 0.40 -0.6
74,508 - GFF4834 0.41 +0.0
74,852 + GFF4834 0.65 +1.2
74,852 + GFF4834 0.65 -0.1
74,852 + GFF4834 0.65 -0.1
74,853 - GFF4834 0.65 -0.3
74,853 - GFF4834 0.65 -0.3
74,853 - GFF4834 0.65 -0.6
74,853 - GFF4834 0.65 -0.1
75,012 - GFF4834 0.77 +0.4
75,087 + GFF4834 0.82 -0.3
75,087 + GFF4834 0.82 +0.5
75,087 + GFF4834 0.82 +0.3
75,087 + GFF4834 0.82 -0.0
75,087 + GFF4834 0.82 -0.2
75,088 - GFF4834 0.82 -0.4
75,166 + GFF4834 0.88 +0.2
75,167 - GFF4834 0.88 +0.7
75,199 - +1.1
75,335 + -0.7
75,335 + -0.6
75,336 - +0.1
75,336 - +0.0
75,517 - GFF4835 0.22 +0.3
75,517 - GFF4835 0.22 -0.9
75,747 + GFF4835 0.49 -0.4
75,758 - GFF4835 0.51 +0.0
75,918 + GFF4835 0.70 -0.3
76,020 + GFF4835 0.82 -0.7
76,021 - GFF4835 0.82 -0.3
76,021 - GFF4835 0.82 -0.3
76,027 + GFF4835 0.82 +0.3
76,027 + GFF4835 0.82 -0.4
76,027 + GFF4835 0.82 +0.7
76,028 - GFF4835 0.83 -1.1
76,028 - GFF4835 0.83 -0.6
76,053 + GFF4835 0.85 -1.0
76,053 + GFF4835 0.85 -0.9
76,054 - GFF4835 0.86 -0.2
76,142 - -0.1
76,221 + +1.2
76,241 - -0.0

Or see this region's nucleotide sequence