Strain Fitness in Xanthobacter sp. DMC5 around GFF4830

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4828 and GFF4829 are separated by 8 nucleotidesGFF4829 and GFF4830 overlap by 11 nucleotidesGFF4830 and GFF4831 overlap by 4 nucleotidesGFF4831 and GFF4832 overlap by 13 nucleotidesGFF4832 and GFF4833 are separated by 5 nucleotides GFF4828 - 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE, at 68,796 to 69,161 GFF4828 GFF4829 - Thermostable monoacylglycerol lipase, at 69,170 to 70,096 GFF4829 GFF4830 - hypothetical protein, at 70,086 to 71,294 GFF4830 GFF4831 - 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE, at 71,291 to 71,725 GFF4831 GFF4832 - hypothetical protein, at 71,713 to 72,201 GFF4832 GFF4833 - Adaptive-response sensory-kinase SasA, at 72,207 to 73,943 GFF4833 Position (kb) 70 71 72Strain fitness (log2 ratio) -2 -1 0 1at 69.105 kb on + strand, within GFF4828at 69.105 kb on + strand, within GFF4828at 69.105 kb on + strand, within GFF4828at 69.105 kb on + strand, within GFF4828at 69.106 kb on - strand, within GFF4828at 69.106 kb on - strand, within GFF4828at 69.106 kb on - strand, within GFF4828at 69.368 kb on + strand, within GFF4829at 69.368 kb on + strand, within GFF4829at 69.369 kb on - strand, within GFF4829at 69.369 kb on - strand, within GFF4829at 69.412 kb on + strand, within GFF4829at 69.413 kb on - strand, within GFF4829at 69.413 kb on - strand, within GFF4829at 69.413 kb on - strand, within GFF4829at 69.413 kb on - strand, within GFF4829at 69.501 kb on + strand, within GFF4829at 69.501 kb on + strand, within GFF4829at 69.501 kb on + strand, within GFF4829at 69.501 kb on + strand, within GFF4829at 69.501 kb on + strand, within GFF4829at 69.502 kb on - strand, within GFF4829at 69.524 kb on + strand, within GFF4829at 69.525 kb on - strand, within GFF4829at 69.620 kb on + strand, within GFF4829at 69.620 kb on + strand, within GFF4829at 69.887 kb on + strand, within GFF4829at 69.887 kb on + strand, within GFF4829at 69.887 kb on + strand, within GFF4829at 69.887 kb on + strand, within GFF4829at 69.887 kb on + strand, within GFF4829at 69.887 kb on + strand, within GFF4829at 69.888 kb on - strand, within GFF4829at 69.888 kb on - strand, within GFF4829at 69.888 kb on - strand, within GFF4829at 69.961 kb on - strand, within GFF4829at 69.961 kb on - strand, within GFF4829at 70.233 kb on + strand, within GFF4830at 70.234 kb on - strand, within GFF4830at 70.342 kb on - strand, within GFF4830at 70.455 kb on - strand, within GFF4830at 70.638 kb on + strand, within GFF4830at 70.704 kb on + strand, within GFF4830at 70.705 kb on - strand, within GFF4830at 70.705 kb on - strand, within GFF4830at 70.890 kb on + strand, within GFF4830at 70.891 kb on - strand, within GFF4830at 70.891 kb on - strand, within GFF4830at 70.941 kb on + strand, within GFF4830at 70.941 kb on + strand, within GFF4830at 71.008 kb on - strand, within GFF4830at 71.052 kb on + strand, within GFF4830at 71.053 kb on - strand, within GFF4830at 71.060 kb on + strand, within GFF4830at 71.060 kb on + strand, within GFF4830at 71.060 kb on + strand, within GFF4830at 71.060 kb on + strand, within GFF4830at 71.060 kb on + strand, within GFF4830at 71.060 kb on + strand, within GFF4830at 71.060 kb on + strand, within GFF4830at 71.061 kb on - strand, within GFF4830at 71.061 kb on - strand, within GFF4830at 71.061 kb on - strand, within GFF4830at 71.130 kb on + strand, within GFF4830at 71.130 kb on + strand, within GFF4830at 71.130 kb on + strand, within GFF4830at 71.130 kb on + strand, within GFF4830at 71.130 kb on + strand, within GFF4830at 71.131 kb on - strand, within GFF4830at 71.335 kb on + strand, within GFF4831at 71.335 kb on + strand, within GFF4831at 71.335 kb on + strand, within GFF4831at 71.336 kb on - strand, within GFF4831at 71.336 kb on - strand, within GFF4831at 71.472 kb on - strand, within GFF4831at 71.472 kb on - strand, within GFF4831at 71.472 kb on - strand, within GFF4831at 71.483 kb on + strand, within GFF4831at 71.512 kb on + strand, within GFF4831at 71.552 kb on + strand, within GFF4831at 71.552 kb on + strand, within GFF4831at 71.552 kb on + strand, within GFF4831at 71.552 kb on + strand, within GFF4831at 71.553 kb on - strand, within GFF4831at 71.553 kb on - strand, within GFF4831at 71.553 kb on - strand, within GFF4831at 71.553 kb on - strand, within GFF4831at 71.937 kb on + strand, within GFF4832at 72.011 kb on - strand, within GFF4832at 72.170 kb on + strandat 72.199 kb on + strandat 72.199 kb on + strandat 72.199 kb on + strandat 72.199 kb on + strandat 72.200 kb on - strandat 72.206 kb on + strandat 72.206 kb on + strandat 72.206 kb on + strandat 72.207 kb on - strandat 72.207 kb on - strandat 72.207 kb on - strandat 72.207 kb on - strandat 72.207 kb on - strandat 72.207 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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69,105 + GFF4828 0.84 -0.3
69,105 + GFF4828 0.84 -0.1
69,105 + GFF4828 0.84 -0.8
69,105 + GFF4828 0.84 +0.7
69,106 - GFF4828 0.85 -1.3
69,106 - GFF4828 0.85 -0.9
69,106 - GFF4828 0.85 +1.2
69,368 + GFF4829 0.21 +0.5
69,368 + GFF4829 0.21 -0.6
69,369 - GFF4829 0.21 -0.8
69,369 - GFF4829 0.21 -1.1
69,412 + GFF4829 0.26 -0.6
69,413 - GFF4829 0.26 +0.7
69,413 - GFF4829 0.26 -1.1
69,413 - GFF4829 0.26 -0.5
69,413 - GFF4829 0.26 +0.1
69,501 + GFF4829 0.36 -0.9
69,501 + GFF4829 0.36 -0.1
69,501 + GFF4829 0.36 -0.4
69,501 + GFF4829 0.36 -0.8
69,501 + GFF4829 0.36 +0.7
69,502 - GFF4829 0.36 -0.8
69,524 + GFF4829 0.38 -0.7
69,525 - GFF4829 0.38 +0.2
69,620 + GFF4829 0.49 -0.3
69,620 + GFF4829 0.49 +0.7
69,887 + GFF4829 0.77 -0.5
69,887 + GFF4829 0.77 +0.4
69,887 + GFF4829 0.77 -0.1
69,887 + GFF4829 0.77 +0.4
69,887 + GFF4829 0.77 +0.2
69,887 + GFF4829 0.77 -0.9
69,888 - GFF4829 0.77 -0.1
69,888 - GFF4829 0.77 +1.4
69,888 - GFF4829 0.77 +1.7
69,961 - GFF4829 0.85 +0.1
69,961 - GFF4829 0.85 -0.9
70,233 + GFF4830 0.12 +0.5
70,234 - GFF4830 0.12 +1.4
70,342 - GFF4830 0.21 +0.8
70,455 - GFF4830 0.31 -0.3
70,638 + GFF4830 0.46 +0.7
70,704 + GFF4830 0.51 +0.6
70,705 - GFF4830 0.51 +0.9
70,705 - GFF4830 0.51 +0.5
70,890 + GFF4830 0.67 +0.3
70,891 - GFF4830 0.67 -1.3
70,891 - GFF4830 0.67 -0.0
70,941 + GFF4830 0.71 -0.3
70,941 + GFF4830 0.71 -0.5
71,008 - GFF4830 0.76 -0.2
71,052 + GFF4830 0.80 +0.3
71,053 - GFF4830 0.80 -0.3
71,060 + GFF4830 0.81 +0.0
71,060 + GFF4830 0.81 -0.7
71,060 + GFF4830 0.81 -0.9
71,060 + GFF4830 0.81 +0.3
71,060 + GFF4830 0.81 +0.5
71,060 + GFF4830 0.81 -0.4
71,060 + GFF4830 0.81 -0.3
71,061 - GFF4830 0.81 +0.7
71,061 - GFF4830 0.81 +0.9
71,061 - GFF4830 0.81 +0.7
71,130 + GFF4830 0.86 +1.4
71,130 + GFF4830 0.86 +1.3
71,130 + GFF4830 0.86 +0.7
71,130 + GFF4830 0.86 +0.5
71,130 + GFF4830 0.86 -0.1
71,131 - GFF4830 0.86 +0.2
71,335 + GFF4831 0.10 -1.8
71,335 + GFF4831 0.10 +1.0
71,335 + GFF4831 0.10 -0.1
71,336 - GFF4831 0.10 -0.6
71,336 - GFF4831 0.10 +0.4
71,472 - GFF4831 0.42 +0.1
71,472 - GFF4831 0.42 +0.0
71,472 - GFF4831 0.42 -0.4
71,483 + GFF4831 0.44 -0.3
71,512 + GFF4831 0.51 +0.1
71,552 + GFF4831 0.60 -0.9
71,552 + GFF4831 0.60 +0.4
71,552 + GFF4831 0.60 -0.4
71,552 + GFF4831 0.60 -0.8
71,553 - GFF4831 0.60 +0.4
71,553 - GFF4831 0.60 +0.3
71,553 - GFF4831 0.60 +0.4
71,553 - GFF4831 0.60 +1.7
71,937 + GFF4832 0.46 +0.2
72,011 - GFF4832 0.61 +1.1
72,170 + +0.4
72,199 + -0.3
72,199 + +0.1
72,199 + +1.0
72,199 + +0.5
72,200 - -2.0
72,206 + -1.4
72,206 + +0.3
72,206 + +0.3
72,207 - +0.6
72,207 - +0.1
72,207 - +0.4
72,207 - -0.6
72,207 - -0.6
72,207 - -0.7

Or see this region's nucleotide sequence