Strain Fitness in Xanthobacter sp. DMC5 around GFF4817

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4815 and GFF4816 are separated by 2 nucleotidesGFF4816 and GFF4817 are separated by 27 nucleotidesGFF4817 and GFF4818 are separated by 6 nucleotides GFF4815 - Acyl-CoA dehydrogenase, at 55,123 to 56,280 GFF4815 GFF4816 - 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase, at 56,283 to 57,203 GFF4816 GFF4817 - putative acetyl-CoA acyltransferase, at 57,231 to 58,427 GFF4817 GFF4818 - Butyryl-CoA:acetate CoA-transferase, at 58,434 to 59,687 GFF4818 Position (kb) 57 58 59Strain fitness (log2 ratio) -2 -1 0 1 2at 56.297 kb on + strandat 56.297 kb on + strandat 56.297 kb on + strandat 56.297 kb on + strandat 56.297 kb on + strandat 56.297 kb on + strandat 56.297 kb on + strandat 56.297 kb on + strandat 56.298 kb on - strandat 56.298 kb on - strandat 56.298 kb on - strandat 56.298 kb on - strandat 56.298 kb on - strandat 56.298 kb on - strandat 56.298 kb on - strandat 56.298 kb on - strandat 56.664 kb on + strand, within GFF4816at 56.664 kb on + strand, within GFF4816at 56.664 kb on + strand, within GFF4816at 56.664 kb on + strand, within GFF4816at 56.782 kb on - strand, within GFF4816at 56.782 kb on - strand, within GFF4816at 56.838 kb on + strand, within GFF4816at 56.985 kb on + strand, within GFF4816at 56.985 kb on + strand, within GFF4816at 56.986 kb on - strand, within GFF4816at 56.986 kb on - strand, within GFF4816at 56.986 kb on - strand, within GFF4816at 56.986 kb on - strand, within GFF4816at 56.986 kb on - strand, within GFF4816at 56.986 kb on - strand, within GFF4816at 56.986 kb on - strand, within GFF4816at 56.986 kb on - strand, within GFF4816at 56.986 kb on - strand, within GFF4816at 57.013 kb on + strand, within GFF4816at 57.014 kb on - strand, within GFF4816at 57.014 kb on - strand, within GFF4816at 57.014 kb on - strand, within GFF4816at 57.014 kb on - strand, within GFF4816at 57.014 kb on - strand, within GFF4816at 57.029 kb on + strand, within GFF4816at 57.029 kb on + strand, within GFF4816at 57.226 kb on + strandat 57.227 kb on - strandat 57.399 kb on + strand, within GFF4817at 57.590 kb on + strand, within GFF4817at 57.591 kb on - strand, within GFF4817at 57.600 kb on + strand, within GFF4817at 57.600 kb on + strand, within GFF4817at 57.600 kb on + strand, within GFF4817at 57.601 kb on - strand, within GFF4817at 57.601 kb on - strand, within GFF4817at 57.601 kb on - strand, within GFF4817at 57.601 kb on - strand, within GFF4817at 57.601 kb on - strand, within GFF4817at 57.649 kb on - strand, within GFF4817at 57.649 kb on - strand, within GFF4817at 57.649 kb on - strand, within GFF4817at 57.649 kb on - strand, within GFF4817at 57.649 kb on - strand, within GFF4817at 57.747 kb on + strand, within GFF4817at 57.747 kb on + strand, within GFF4817at 57.747 kb on + strand, within GFF4817at 57.748 kb on - strand, within GFF4817at 57.748 kb on - strand, within GFF4817at 57.748 kb on - strand, within GFF4817at 57.752 kb on + strand, within GFF4817at 57.752 kb on + strand, within GFF4817at 57.752 kb on + strand, within GFF4817at 57.752 kb on + strand, within GFF4817at 57.752 kb on + strand, within GFF4817at 57.752 kb on + strand, within GFF4817at 57.753 kb on - strand, within GFF4817at 57.753 kb on - strand, within GFF4817at 57.753 kb on - strand, within GFF4817at 57.753 kb on - strand, within GFF4817at 57.753 kb on - strand, within GFF4817at 57.753 kb on - strand, within GFF4817at 57.777 kb on + strand, within GFF4817at 57.777 kb on + strand, within GFF4817at 57.778 kb on - strand, within GFF4817at 57.778 kb on - strand, within GFF4817at 57.778 kb on - strand, within GFF4817at 57.778 kb on - strand, within GFF4817at 58.362 kb on + strandat 58.363 kb on - strandat 58.607 kb on + strand, within GFF4818at 58.636 kb on + strand, within GFF4818at 58.636 kb on + strand, within GFF4818at 58.636 kb on + strand, within GFF4818at 58.636 kb on + strand, within GFF4818at 58.636 kb on + strand, within GFF4818at 58.636 kb on + strand, within GFF4818at 58.636 kb on + strand, within GFF4818at 58.637 kb on - strand, within GFF4818at 58.637 kb on - strand, within GFF4818at 58.637 kb on - strand, within GFF4818at 58.637 kb on - strand, within GFF4818at 58.637 kb on - strand, within GFF4818at 58.637 kb on - strand, within GFF4818at 58.637 kb on - strand, within GFF4818at 58.716 kb on + strand, within GFF4818at 58.716 kb on + strand, within GFF4818at 58.716 kb on + strand, within GFF4818at 58.717 kb on - strand, within GFF4818at 58.762 kb on + strand, within GFF4818at 58.762 kb on + strand, within GFF4818at 58.763 kb on - strand, within GFF4818at 58.763 kb on - strand, within GFF4818at 58.763 kb on - strand, within GFF4818at 58.763 kb on - strand, within GFF4818at 58.763 kb on - strand, within GFF4818at 58.763 kb on - strand, within GFF4818at 58.821 kb on + strand, within GFF4818at 58.821 kb on + strand, within GFF4818at 58.822 kb on - strand, within GFF4818at 58.822 kb on - strand, within GFF4818at 58.917 kb on + strand, within GFF4818at 58.917 kb on + strand, within GFF4818at 58.957 kb on + strand, within GFF4818at 58.957 kb on + strand, within GFF4818at 58.958 kb on - strand, within GFF4818at 58.977 kb on - strand, within GFF4818at 59.095 kb on + strand, within GFF4818at 59.095 kb on + strand, within GFF4818at 59.095 kb on + strand, within GFF4818at 59.095 kb on + strand, within GFF4818at 59.095 kb on + strand, within GFF4818at 59.096 kb on - strand, within GFF4818at 59.096 kb on - strand, within GFF4818at 59.096 kb on - strand, within GFF4818at 59.096 kb on - strand, within GFF4818at 59.209 kb on + strand, within GFF4818at 59.209 kb on + strand, within GFF4818at 59.210 kb on - strand, within GFF4818at 59.210 kb on - strand, within GFF4818at 59.385 kb on + strand, within GFF4818at 59.385 kb on + strand, within GFF4818at 59.386 kb on - strand, within GFF4818at 59.387 kb on + strand, within GFF4818at 59.388 kb on - strand, within GFF4818

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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56,297 + -0.0
56,297 + +1.7
56,297 + -1.1
56,297 + -0.8
56,297 + -0.6
56,297 + -0.6
56,297 + +0.2
56,297 + +0.1
56,298 - +0.1
56,298 - +0.5
56,298 - -1.9
56,298 - -0.3
56,298 - -0.1
56,298 - +0.2
56,298 - +1.2
56,298 - -0.0
56,664 + GFF4816 0.41 -0.3
56,664 + GFF4816 0.41 -1.0
56,664 + GFF4816 0.41 -0.2
56,664 + GFF4816 0.41 +0.3
56,782 - GFF4816 0.54 +0.7
56,782 - GFF4816 0.54 +0.3
56,838 + GFF4816 0.60 -1.5
56,985 + GFF4816 0.76 +0.4
56,985 + GFF4816 0.76 -1.9
56,986 - GFF4816 0.76 -0.6
56,986 - GFF4816 0.76 +0.5
56,986 - GFF4816 0.76 +0.4
56,986 - GFF4816 0.76 +1.7
56,986 - GFF4816 0.76 -0.2
56,986 - GFF4816 0.76 +0.9
56,986 - GFF4816 0.76 -0.9
56,986 - GFF4816 0.76 -0.4
56,986 - GFF4816 0.76 -0.4
57,013 + GFF4816 0.79 -0.9
57,014 - GFF4816 0.79 +0.4
57,014 - GFF4816 0.79 +0.3
57,014 - GFF4816 0.79 -0.0
57,014 - GFF4816 0.79 -0.1
57,014 - GFF4816 0.79 +0.5
57,029 + GFF4816 0.81 -0.5
57,029 + GFF4816 0.81 +0.5
57,226 + +0.4
57,227 - +1.2
57,399 + GFF4817 0.14 +0.1
57,590 + GFF4817 0.30 -0.3
57,591 - GFF4817 0.30 -0.1
57,600 + GFF4817 0.31 -0.1
57,600 + GFF4817 0.31 +0.7
57,600 + GFF4817 0.31 -2.1
57,601 - GFF4817 0.31 -0.5
57,601 - GFF4817 0.31 -1.1
57,601 - GFF4817 0.31 -0.9
57,601 - GFF4817 0.31 -0.8
57,601 - GFF4817 0.31 +0.1
57,649 - GFF4817 0.35 -1.0
57,649 - GFF4817 0.35 -0.9
57,649 - GFF4817 0.35 -0.6
57,649 - GFF4817 0.35 -1.2
57,649 - GFF4817 0.35 -0.1
57,747 + GFF4817 0.43 -1.1
57,747 + GFF4817 0.43 -0.5
57,747 + GFF4817 0.43 +0.8
57,748 - GFF4817 0.43 +0.1
57,748 - GFF4817 0.43 +0.1
57,748 - GFF4817 0.43 -1.0
57,752 + GFF4817 0.44 -0.8
57,752 + GFF4817 0.44 -1.6
57,752 + GFF4817 0.44 -0.4
57,752 + GFF4817 0.44 +0.4
57,752 + GFF4817 0.44 -0.5
57,752 + GFF4817 0.44 +0.1
57,753 - GFF4817 0.44 -1.3
57,753 - GFF4817 0.44 +0.3
57,753 - GFF4817 0.44 +0.7
57,753 - GFF4817 0.44 -0.3
57,753 - GFF4817 0.44 +0.7
57,753 - GFF4817 0.44 +0.2
57,777 + GFF4817 0.46 -0.7
57,777 + GFF4817 0.46 -0.2
57,778 - GFF4817 0.46 -0.5
57,778 - GFF4817 0.46 +0.1
57,778 - GFF4817 0.46 +1.1
57,778 - GFF4817 0.46 +0.6
58,362 + +0.3
58,363 - -0.5
58,607 + GFF4818 0.14 -0.3
58,636 + GFF4818 0.16 +0.1
58,636 + GFF4818 0.16 -0.2
58,636 + GFF4818 0.16 +0.0
58,636 + GFF4818 0.16 -0.1
58,636 + GFF4818 0.16 +0.7
58,636 + GFF4818 0.16 -1.5
58,636 + GFF4818 0.16 -0.4
58,637 - GFF4818 0.16 +0.6
58,637 - GFF4818 0.16 -0.3
58,637 - GFF4818 0.16 -0.2
58,637 - GFF4818 0.16 -0.3
58,637 - GFF4818 0.16 +1.0
58,637 - GFF4818 0.16 -0.1
58,637 - GFF4818 0.16 +0.1
58,716 + GFF4818 0.22 -0.3
58,716 + GFF4818 0.22 +1.9
58,716 + GFF4818 0.22 +0.1
58,717 - GFF4818 0.23 +0.8
58,762 + GFF4818 0.26 -0.3
58,762 + GFF4818 0.26 -0.2
58,763 - GFF4818 0.26 +1.1
58,763 - GFF4818 0.26 +0.9
58,763 - GFF4818 0.26 -0.5
58,763 - GFF4818 0.26 -0.4
58,763 - GFF4818 0.26 -0.5
58,763 - GFF4818 0.26 +0.5
58,821 + GFF4818 0.31 -0.9
58,821 + GFF4818 0.31 +0.4
58,822 - GFF4818 0.31 -0.2
58,822 - GFF4818 0.31 -1.7
58,917 + GFF4818 0.39 +0.8
58,917 + GFF4818 0.39 -0.4
58,957 + GFF4818 0.42 -0.1
58,957 + GFF4818 0.42 -0.4
58,958 - GFF4818 0.42 +1.5
58,977 - GFF4818 0.43 -1.1
59,095 + GFF4818 0.53 +0.1
59,095 + GFF4818 0.53 +0.9
59,095 + GFF4818 0.53 +0.1
59,095 + GFF4818 0.53 -0.7
59,095 + GFF4818 0.53 -1.9
59,096 - GFF4818 0.53 +0.3
59,096 - GFF4818 0.53 -0.3
59,096 - GFF4818 0.53 +0.1
59,096 - GFF4818 0.53 +0.1
59,209 + GFF4818 0.62 -1.4
59,209 + GFF4818 0.62 -0.3
59,210 - GFF4818 0.62 +0.8
59,210 - GFF4818 0.62 -0.1
59,385 + GFF4818 0.76 +0.0
59,385 + GFF4818 0.76 +0.9
59,386 - GFF4818 0.76 +0.6
59,387 + GFF4818 0.76 +0.5
59,388 - GFF4818 0.76 -0.7

Or see this region's nucleotide sequence