Strain Fitness in Xanthobacter sp. DMC5 around GFF4808

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4806 and GFF4807 overlap by 11 nucleotidesGFF4807 and GFF4808 are separated by 1 nucleotidesGFF4808 and GFF4809 overlap by 8 nucleotidesGFF4809 and GFF4810 are separated by 105 nucleotides GFF4806 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 47,417 to 48,148 GFF4806 GFF4807 - Lipopolysaccharide export system ATP-binding protein LptB, at 48,138 to 48,878 GFF4807 GFF4808 - hypothetical protein, at 48,880 to 49,803 GFF4808 GFF4809 - High-affinity branched-chain amino acid transport system permease protein LivH, at 49,796 to 50,671 GFF4809 GFF4810 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 50,777 to 51,991 GFF4810 Position (kb) 48 49 50Strain fitness (log2 ratio) -2 -1 0 1 2at 47.992 kb on + strand, within GFF4806at 47.992 kb on + strand, within GFF4806at 47.992 kb on + strand, within GFF4806at 47.992 kb on + strand, within GFF4806at 47.993 kb on - strand, within GFF4806at 47.993 kb on - strand, within GFF4806at 47.993 kb on - strand, within GFF4806at 48.091 kb on - strandat 48.163 kb on + strandat 48.163 kb on + strandat 48.163 kb on + strandat 48.163 kb on + strandat 48.164 kb on - strandat 48.164 kb on - strandat 48.164 kb on - strandat 48.164 kb on - strandat 48.478 kb on + strand, within GFF4807at 48.478 kb on + strand, within GFF4807at 48.479 kb on - strand, within GFF4807at 48.569 kb on + strand, within GFF4807at 48.569 kb on + strand, within GFF4807at 48.569 kb on + strand, within GFF4807at 48.570 kb on - strand, within GFF4807at 48.570 kb on - strand, within GFF4807at 48.570 kb on - strand, within GFF4807at 48.570 kb on - strand, within GFF4807at 48.570 kb on - strand, within GFF4807at 48.706 kb on + strand, within GFF4807at 48.706 kb on + strand, within GFF4807at 48.918 kb on - strandat 48.984 kb on + strand, within GFF4808at 48.984 kb on + strand, within GFF4808at 48.984 kb on + strand, within GFF4808at 48.985 kb on - strand, within GFF4808at 49.013 kb on + strand, within GFF4808at 49.013 kb on + strand, within GFF4808at 49.013 kb on + strand, within GFF4808at 49.013 kb on + strand, within GFF4808at 49.014 kb on - strand, within GFF4808at 49.014 kb on - strand, within GFF4808at 49.014 kb on - strand, within GFF4808at 49.014 kb on - strand, within GFF4808at 49.014 kb on - strand, within GFF4808at 49.014 kb on - strand, within GFF4808at 49.014 kb on - strand, within GFF4808at 49.014 kb on - strand, within GFF4808at 49.088 kb on + strand, within GFF4808at 49.088 kb on + strand, within GFF4808at 49.089 kb on - strand, within GFF4808at 49.224 kb on + strand, within GFF4808at 49.307 kb on + strand, within GFF4808at 49.308 kb on - strand, within GFF4808at 49.308 kb on - strand, within GFF4808at 49.308 kb on - strand, within GFF4808at 49.431 kb on - strand, within GFF4808at 49.478 kb on + strand, within GFF4808at 49.478 kb on + strand, within GFF4808at 49.505 kb on + strand, within GFF4808at 49.505 kb on + strand, within GFF4808at 49.555 kb on - strand, within GFF4808at 49.605 kb on - strand, within GFF4808at 49.605 kb on - strand, within GFF4808at 49.605 kb on - strand, within GFF4808at 49.724 kb on + strandat 49.724 kb on + strandat 49.724 kb on + strandat 49.724 kb on + strandat 49.724 kb on + strandat 49.725 kb on - strandat 49.725 kb on - strandat 49.725 kb on - strandat 49.781 kb on + strandat 49.887 kb on + strand, within GFF4809at 49.887 kb on + strand, within GFF4809at 49.888 kb on - strand, within GFF4809at 49.888 kb on - strand, within GFF4809at 49.936 kb on + strand, within GFF4809at 49.936 kb on + strand, within GFF4809at 49.937 kb on - strand, within GFF4809at 49.937 kb on - strand, within GFF4809at 50.103 kb on + strand, within GFF4809at 50.103 kb on + strand, within GFF4809at 50.103 kb on + strand, within GFF4809at 50.104 kb on - strand, within GFF4809at 50.104 kb on - strand, within GFF4809at 50.190 kb on + strand, within GFF4809at 50.190 kb on + strand, within GFF4809at 50.191 kb on - strand, within GFF4809at 50.191 kb on - strand, within GFF4809at 50.191 kb on - strand, within GFF4809at 50.191 kb on - strand, within GFF4809at 50.191 kb on - strand, within GFF4809at 50.191 kb on - strand, within GFF4809at 50.191 kb on - strand, within GFF4809at 50.246 kb on + strand, within GFF4809at 50.246 kb on + strand, within GFF4809at 50.246 kb on + strand, within GFF4809at 50.282 kb on + strand, within GFF4809at 50.412 kb on + strand, within GFF4809at 50.412 kb on + strand, within GFF4809at 50.412 kb on + strand, within GFF4809at 50.412 kb on + strand, within GFF4809at 50.412 kb on + strand, within GFF4809at 50.412 kb on + strand, within GFF4809at 50.413 kb on - strand, within GFF4809at 50.413 kb on - strand, within GFF4809at 50.413 kb on - strand, within GFF4809at 50.413 kb on - strand, within GFF4809at 50.413 kb on - strand, within GFF4809at 50.413 kb on - strand, within GFF4809at 50.413 kb on - strand, within GFF4809at 50.413 kb on - strand, within GFF4809at 50.413 kb on - strand, within GFF4809at 50.413 kb on - strand, within GFF4809at 50.413 kb on - strand, within GFF4809at 50.469 kb on + strand, within GFF4809at 50.469 kb on + strand, within GFF4809at 50.619 kb on + strandat 50.619 kb on + strandat 50.619 kb on + strandat 50.620 kb on - strandat 50.620 kb on - strandat 50.620 kb on - strandat 50.657 kb on + strandat 50.657 kb on + strandat 50.657 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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47,992 + GFF4806 0.79 -0.3
47,992 + GFF4806 0.79 +0.3
47,992 + GFF4806 0.79 +0.1
47,992 + GFF4806 0.79 -0.2
47,993 - GFF4806 0.79 -0.3
47,993 - GFF4806 0.79 +1.2
47,993 - GFF4806 0.79 -1.5
48,091 - -0.1
48,163 + +0.3
48,163 + -0.1
48,163 + -0.2
48,163 + +0.3
48,164 - -0.1
48,164 - +0.9
48,164 - -0.8
48,164 - +0.3
48,478 + GFF4807 0.46 +1.0
48,478 + GFF4807 0.46 +0.3
48,479 - GFF4807 0.46 +0.2
48,569 + GFF4807 0.58 -0.3
48,569 + GFF4807 0.58 -0.2
48,569 + GFF4807 0.58 +0.5
48,570 - GFF4807 0.58 -0.0
48,570 - GFF4807 0.58 +0.5
48,570 - GFF4807 0.58 -0.2
48,570 - GFF4807 0.58 -1.0
48,570 - GFF4807 0.58 -1.6
48,706 + GFF4807 0.77 -0.9
48,706 + GFF4807 0.77 -0.2
48,918 - -0.1
48,984 + GFF4808 0.11 -0.9
48,984 + GFF4808 0.11 +0.1
48,984 + GFF4808 0.11 +0.5
48,985 - GFF4808 0.11 -0.3
49,013 + GFF4808 0.14 +0.3
49,013 + GFF4808 0.14 +1.7
49,013 + GFF4808 0.14 -0.1
49,013 + GFF4808 0.14 +0.5
49,014 - GFF4808 0.15 +1.0
49,014 - GFF4808 0.15 +2.5
49,014 - GFF4808 0.15 -0.7
49,014 - GFF4808 0.15 -1.3
49,014 - GFF4808 0.15 +0.9
49,014 - GFF4808 0.15 +0.2
49,014 - GFF4808 0.15 +0.7
49,014 - GFF4808 0.15 -0.0
49,088 + GFF4808 0.23 +0.1
49,088 + GFF4808 0.23 +0.4
49,089 - GFF4808 0.23 +0.0
49,224 + GFF4808 0.37 -0.9
49,307 + GFF4808 0.46 +0.5
49,308 - GFF4808 0.46 +1.1
49,308 - GFF4808 0.46 -1.2
49,308 - GFF4808 0.46 +1.1
49,431 - GFF4808 0.60 +0.4
49,478 + GFF4808 0.65 +1.2
49,478 + GFF4808 0.65 +0.5
49,505 + GFF4808 0.68 -1.0
49,505 + GFF4808 0.68 -0.5
49,555 - GFF4808 0.73 -0.7
49,605 - GFF4808 0.78 +0.5
49,605 - GFF4808 0.78 -0.2
49,605 - GFF4808 0.78 +0.4
49,724 + -0.1
49,724 + -0.1
49,724 + +0.1
49,724 + -0.1
49,724 + -1.0
49,725 - -0.1
49,725 - +0.4
49,725 - +0.9
49,781 + +0.9
49,887 + GFF4809 0.10 +0.3
49,887 + GFF4809 0.10 -1.5
49,888 - GFF4809 0.11 -0.4
49,888 - GFF4809 0.11 +0.2
49,936 + GFF4809 0.16 -0.0
49,936 + GFF4809 0.16 +0.1
49,937 - GFF4809 0.16 -0.9
49,937 - GFF4809 0.16 +0.7
50,103 + GFF4809 0.35 -0.3
50,103 + GFF4809 0.35 +0.5
50,103 + GFF4809 0.35 -0.5
50,104 - GFF4809 0.35 +0.6
50,104 - GFF4809 0.35 +0.4
50,190 + GFF4809 0.45 +1.5
50,190 + GFF4809 0.45 -0.4
50,191 - GFF4809 0.45 -0.0
50,191 - GFF4809 0.45 -0.4
50,191 - GFF4809 0.45 -0.5
50,191 - GFF4809 0.45 +0.2
50,191 - GFF4809 0.45 -0.4
50,191 - GFF4809 0.45 +0.4
50,191 - GFF4809 0.45 -1.1
50,246 + GFF4809 0.51 -0.9
50,246 + GFF4809 0.51 -0.1
50,246 + GFF4809 0.51 +1.1
50,282 + GFF4809 0.55 +0.4
50,412 + GFF4809 0.70 -0.1
50,412 + GFF4809 0.70 +0.3
50,412 + GFF4809 0.70 -0.6
50,412 + GFF4809 0.70 -1.0
50,412 + GFF4809 0.70 -1.2
50,412 + GFF4809 0.70 -0.5
50,413 - GFF4809 0.70 -0.9
50,413 - GFF4809 0.70 -0.6
50,413 - GFF4809 0.70 -0.8
50,413 - GFF4809 0.70 -1.5
50,413 - GFF4809 0.70 -1.4
50,413 - GFF4809 0.70 -0.2
50,413 - GFF4809 0.70 -0.6
50,413 - GFF4809 0.70 +0.1
50,413 - GFF4809 0.70 +0.1
50,413 - GFF4809 0.70 -0.4
50,413 - GFF4809 0.70 +0.1
50,469 + GFF4809 0.77 +0.1
50,469 + GFF4809 0.77 -0.5
50,619 + +0.6
50,619 + -0.8
50,619 + +0.5
50,620 - +0.1
50,620 - -1.5
50,620 - -0.1
50,657 + +0.3
50,657 + -2.1
50,657 + +0.5

Or see this region's nucleotide sequence