Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4734 and GFF4735 are separated by 9 nucleotides GFF4735 and GFF4736 are separated by 5 nucleotides GFF4736 and GFF4737 are separated by 11 nucleotides GFF4737 and GFF4738 overlap by 1 nucleotides
GFF4734 - hypothetical protein, at 145,328 to 145,717
GFF4734
GFF4735 - Chaperone SurA, at 145,727 to 146,569
GFF4735
GFF4736 - Respiratory nitrate reductase 1 gamma chain, at 146,575 to 147,348
GFF4736
GFF4737 - Nitrate reductase molybdenum cofactor assembly chaperone NarJ, at 147,360 to 148,082
GFF4737
GFF4738 - Respiratory nitrate reductase 1 beta chain, at 148,082 to 149,617
GFF4738
Position (kb) 146
147
148 Strain fitness (log2 ratio) -1
0
1 at 145.581 kb on + strand, within GFF4734 at 145.581 kb on + strand, within GFF4734 at 145.602 kb on + strand, within GFF4734 at 145.728 kb on + strand at 145.729 kb on - strand at 145.803 kb on + strand at 145.803 kb on + strand at 145.803 kb on + strand at 145.803 kb on + strand at 146.196 kb on + strand, within GFF4735 at 146.196 kb on + strand, within GFF4735 at 146.197 kb on - strand, within GFF4735 at 146.687 kb on + strand, within GFF4736 at 146.725 kb on + strand, within GFF4736 at 146.725 kb on + strand, within GFF4736 at 146.725 kb on + strand, within GFF4736 at 146.725 kb on + strand, within GFF4736 at 146.725 kb on + strand, within GFF4736 at 146.726 kb on - strand, within GFF4736 at 146.726 kb on - strand, within GFF4736 at 146.726 kb on - strand, within GFF4736 at 146.726 kb on - strand, within GFF4736 at 146.773 kb on + strand, within GFF4736 at 146.816 kb on + strand, within GFF4736 at 146.817 kb on - strand, within GFF4736 at 146.817 kb on - strand, within GFF4736 at 146.817 kb on - strand, within GFF4736 at 147.248 kb on + strand, within GFF4736 at 147.248 kb on + strand, within GFF4736 at 147.248 kb on + strand, within GFF4736 at 147.249 kb on - strand, within GFF4736 at 147.249 kb on - strand, within GFF4736 at 147.613 kb on + strand, within GFF4737 at 147.613 kb on + strand, within GFF4737 at 147.889 kb on + strand, within GFF4737 at 147.889 kb on + strand, within GFF4737 at 147.889 kb on + strand, within GFF4737 at 147.889 kb on + strand, within GFF4737 at 147.890 kb on - strand, within GFF4737 at 147.890 kb on - strand, within GFF4737 at 147.890 kb on - strand, within GFF4737 at 147.907 kb on + strand, within GFF4737 at 148.266 kb on + strand, within GFF4738 at 148.290 kb on + strand, within GFF4738 at 148.290 kb on + strand, within GFF4738 at 148.290 kb on + strand, within GFF4738 at 148.290 kb on + strand, within GFF4738 at 148.291 kb on - strand, within GFF4738
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 145,581 + GFF4734 0.65 +0.5 145,581 + GFF4734 0.65 -0.5 145,602 + GFF4734 0.70 +0.6 145,728 + +0.3 145,729 - +0.9 145,803 + +0.8 145,803 + +0.0 145,803 + -0.6 145,803 + +0.4 146,196 + GFF4735 0.56 -0.3 146,196 + GFF4735 0.56 -0.2 146,197 - GFF4735 0.56 +0.1 146,687 + GFF4736 0.14 -0.6 146,725 + GFF4736 0.19 -0.7 146,725 + GFF4736 0.19 +0.4 146,725 + GFF4736 0.19 -0.5 146,725 + GFF4736 0.19 -1.6 146,725 + GFF4736 0.19 -0.3 146,726 - GFF4736 0.20 -0.4 146,726 - GFF4736 0.20 +0.2 146,726 - GFF4736 0.20 +0.9 146,726 - GFF4736 0.20 +0.1 146,773 + GFF4736 0.26 -0.1 146,816 + GFF4736 0.31 -0.8 146,817 - GFF4736 0.31 +0.0 146,817 - GFF4736 0.31 -0.1 146,817 - GFF4736 0.31 -1.1 147,248 + GFF4736 0.87 -0.6 147,248 + GFF4736 0.87 -0.6 147,248 + GFF4736 0.87 +1.0 147,249 - GFF4736 0.87 -0.2 147,249 - GFF4736 0.87 +0.5 147,613 + GFF4737 0.35 -0.4 147,613 + GFF4737 0.35 +0.5 147,889 + GFF4737 0.73 +0.3 147,889 + GFF4737 0.73 +0.8 147,889 + GFF4737 0.73 +0.6 147,889 + GFF4737 0.73 -0.1 147,890 - GFF4737 0.73 -0.5 147,890 - GFF4737 0.73 +0.1 147,890 - GFF4737 0.73 +0.4 147,907 + GFF4737 0.76 -0.3 148,266 + GFF4738 0.12 +0.0 148,290 + GFF4738 0.14 +0.3 148,290 + GFF4738 0.14 -0.6 148,290 + GFF4738 0.14 -0.7 148,290 + GFF4738 0.14 +1.1 148,291 - GFF4738 0.14 +0.8
Or see this region's nucleotide sequence