Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4715 and GFF4716 overlap by 4 nucleotides GFF4716 and GFF4717 overlap by 4 nucleotides GFF4717 and GFF4718 are separated by 171 nucleotides GFF4718 and GFF4719 are separated by 35 nucleotides
GFF4715 - Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase, at 127,248 to 128,468
GFF4715
GFF4716 - Ribosomal RNA large subunit methyltransferase E, at 128,465 to 129,193
GFF4716
GFF4717 - putative transport protein HsrA, at 129,190 to 130,629
GFF4717
GFF4718 - hypothetical protein, at 130,801 to 131,055
GFF4718
GFF4719 - Quinone oxidoreductase 1, at 131,091 to 132,101
GFF4719
Position (kb) 129
130
131 Strain fitness (log2 ratio) -1
0
1
2 at 128.206 kb on + strand, within GFF4715 at 128.206 kb on + strand, within GFF4715 at 128.206 kb on + strand, within GFF4715 at 128.318 kb on + strand, within GFF4715 at 129.191 kb on + strand at 129.192 kb on - strand at 129.313 kb on + strand at 129.645 kb on - strand, within GFF4717 at 129.645 kb on - strand, within GFF4717 at 129.899 kb on + strand, within GFF4717 at 129.899 kb on + strand, within GFF4717 at 130.148 kb on + strand, within GFF4717 at 130.149 kb on - strand, within GFF4717 at 130.149 kb on - strand, within GFF4717 at 130.317 kb on - strand, within GFF4717 at 130.466 kb on + strand, within GFF4717 at 130.467 kb on - strand, within GFF4717 at 130.467 kb on - strand, within GFF4717 at 130.467 kb on - strand, within GFF4717 at 130.636 kb on - strand at 130.636 kb on - strand at 130.765 kb on - strand at 130.765 kb on - strand at 130.807 kb on + strand at 130.808 kb on - strand at 130.808 kb on - strand at 131.092 kb on + strand at 131.398 kb on + strand, within GFF4719 at 131.399 kb on - strand, within GFF4719 at 131.413 kb on + strand, within GFF4719 at 131.414 kb on - strand, within GFF4719 at 131.500 kb on + strand, within GFF4719 at 131.500 kb on + strand, within GFF4719 at 131.500 kb on + strand, within GFF4719
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 128,206 + GFF4715 0.78 +1.6 128,206 + GFF4715 0.78 +1.1 128,206 + GFF4715 0.78 +1.7 128,318 + GFF4715 0.88 +1.8 129,191 + +0.9 129,192 - -0.9 129,313 + +0.9 129,645 - GFF4717 0.32 +0.3 129,645 - GFF4717 0.32 -0.3 129,899 + GFF4717 0.49 +0.1 129,899 + GFF4717 0.49 +0.1 130,148 + GFF4717 0.67 +0.3 130,149 - GFF4717 0.67 +0.6 130,149 - GFF4717 0.67 +1.3 130,317 - GFF4717 0.78 +0.3 130,466 + GFF4717 0.89 +0.9 130,467 - GFF4717 0.89 -0.1 130,467 - GFF4717 0.89 -0.1 130,467 - GFF4717 0.89 +0.0 130,636 - +0.7 130,636 - -0.8 130,765 - +0.5 130,765 - -0.1 130,807 + -0.1 130,808 - +0.6 130,808 - -0.6 131,092 + -0.5 131,398 + GFF4719 0.30 -0.7 131,399 - GFF4719 0.30 +0.0 131,413 + GFF4719 0.32 +1.8 131,414 - GFF4719 0.32 +0.7 131,500 + GFF4719 0.40 +0.9 131,500 + GFF4719 0.40 -0.4 131,500 + GFF4719 0.40 +0.6
Or see this region's nucleotide sequence