Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4673 and GFF4674 are separated by 192 nucleotides GFF4674 and GFF4675 are separated by 59 nucleotides GFF4675 and GFF4676 are separated by 202 nucleotides
GFF4673 - hypothetical protein, at 81,308 to 81,715
GFF4673
GFF4674 - hypothetical protein, at 81,908 to 82,468
GFF4674
GFF4675 - D-xylose transporter, at 82,528 to 84,030
GFF4675
GFF4676 - hypothetical protein, at 84,233 to 84,937
GFF4676
Position (kb) 82
83
84
85 Strain fitness (log2 ratio) -2
-1
0
1 at 81.551 kb on - strand, within GFF4673 at 81.551 kb on - strand, within GFF4673 at 81.756 kb on + strand at 81.757 kb on - strand at 81.799 kb on + strand at 81.838 kb on + strand at 81.838 kb on + strand at 81.839 kb on - strand at 81.839 kb on - strand at 81.852 kb on + strand at 82.520 kb on - strand at 82.574 kb on + strand at 82.766 kb on + strand, within GFF4675 at 82.766 kb on + strand, within GFF4675 at 82.766 kb on + strand, within GFF4675 at 82.767 kb on - strand, within GFF4675 at 82.767 kb on - strand, within GFF4675 at 82.767 kb on - strand, within GFF4675 at 82.853 kb on + strand, within GFF4675 at 82.854 kb on - strand, within GFF4675 at 82.854 kb on - strand, within GFF4675 at 82.854 kb on - strand, within GFF4675 at 82.854 kb on - strand, within GFF4675 at 82.856 kb on + strand, within GFF4675 at 82.856 kb on + strand, within GFF4675 at 82.857 kb on - strand, within GFF4675 at 82.857 kb on - strand, within GFF4675 at 83.108 kb on + strand, within GFF4675 at 83.108 kb on + strand, within GFF4675 at 83.109 kb on - strand, within GFF4675 at 83.420 kb on + strand, within GFF4675 at 83.420 kb on + strand, within GFF4675 at 83.421 kb on - strand, within GFF4675 at 83.421 kb on - strand, within GFF4675 at 83.421 kb on - strand, within GFF4675 at 83.973 kb on + strand at 83.973 kb on + strand at 83.973 kb on + strand at 83.973 kb on + strand at 83.974 kb on - strand at 83.975 kb on + strand at 83.975 kb on + strand at 83.975 kb on + strand at 83.975 kb on + strand at 83.976 kb on - strand at 83.976 kb on - strand at 83.976 kb on - strand at 83.976 kb on - strand at 84.083 kb on + strand at 84.083 kb on + strand at 84.084 kb on - strand at 84.866 kb on + strand, within GFF4676 at 84.867 kb on - strand at 84.867 kb on - strand at 84.929 kb on + strand at 84.930 kb on - strand at 85.000 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 81,551 - GFF4673 0.60 +0.6 81,551 - GFF4673 0.60 -0.3 81,756 + -1.3 81,757 - -0.7 81,799 + -0.1 81,838 + +0.2 81,838 + -0.5 81,839 - -0.3 81,839 - +0.4 81,852 + +1.0 82,520 - -0.6 82,574 + -0.4 82,766 + GFF4675 0.16 +0.3 82,766 + GFF4675 0.16 +0.6 82,766 + GFF4675 0.16 +0.2 82,767 - GFF4675 0.16 +0.4 82,767 - GFF4675 0.16 -0.5 82,767 - GFF4675 0.16 -0.4 82,853 + GFF4675 0.22 -0.5 82,854 - GFF4675 0.22 +0.0 82,854 - GFF4675 0.22 -0.5 82,854 - GFF4675 0.22 +0.3 82,854 - GFF4675 0.22 +0.2 82,856 + GFF4675 0.22 -0.8 82,856 + GFF4675 0.22 -0.9 82,857 - GFF4675 0.22 -2.5 82,857 - GFF4675 0.22 -1.3 83,108 + GFF4675 0.39 +1.3 83,108 + GFF4675 0.39 +0.4 83,109 - GFF4675 0.39 +1.0 83,420 + GFF4675 0.59 +0.2 83,420 + GFF4675 0.59 +0.2 83,421 - GFF4675 0.59 -0.1 83,421 - GFF4675 0.59 -0.6 83,421 - GFF4675 0.59 -0.2 83,973 + +0.5 83,973 + -0.8 83,973 + -0.3 83,973 + -1.6 83,974 - -0.1 83,975 + -0.4 83,975 + -0.7 83,975 + -0.8 83,975 + +0.8 83,976 - +0.0 83,976 - +0.0 83,976 - +0.3 83,976 - +1.4 84,083 + -0.1 84,083 + +0.3 84,084 - -0.1 84,866 + GFF4676 0.90 -0.5 84,867 - +0.5 84,867 - +0.5 84,929 + +1.1 84,930 - +0.9 85,000 + +0.5
Or see this region's nucleotide sequence