Strain Fitness in Xanthobacter sp. DMC5 around GFF4640

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4639 and GFF4640 are separated by 3 nucleotidesGFF4640 and GFF4641 are separated by 76 nucleotides GFF4639 - Cell division protein ZapE, at 49,591 to 50,778 GFF4639 GFF4640 - hypothetical protein, at 50,782 to 51,333 GFF4640 GFF4641 - hypothetical protein, at 51,410 to 52,225 GFF4641 Position (kb) 50 51 52Strain fitness (log2 ratio) -1 0 1 2at 49.798 kb on + strand, within GFF4639at 49.798 kb on + strand, within GFF4639at 49.798 kb on + strand, within GFF4639at 49.798 kb on + strand, within GFF4639at 49.798 kb on + strand, within GFF4639at 49.798 kb on + strand, within GFF4639at 49.798 kb on + strand, within GFF4639at 49.798 kb on + strand, within GFF4639at 49.798 kb on + strand, within GFF4639at 49.799 kb on - strand, within GFF4639at 49.799 kb on - strand, within GFF4639at 49.799 kb on - strand, within GFF4639at 49.799 kb on - strand, within GFF4639at 49.799 kb on - strand, within GFF4639at 49.799 kb on - strand, within GFF4639at 49.799 kb on - strand, within GFF4639at 49.799 kb on - strand, within GFF4639at 49.799 kb on - strand, within GFF4639at 49.799 kb on - strand, within GFF4639at 49.799 kb on - strand, within GFF4639at 49.799 kb on - strand, within GFF4639at 49.799 kb on - strand, within GFF4639at 49.799 kb on - strand, within GFF4639at 49.799 kb on - strand, within GFF4639at 49.799 kb on - strand, within GFF4639at 49.799 kb on - strand, within GFF4639at 49.799 kb on - strand, within GFF4639at 49.799 kb on - strand, within GFF4639at 49.804 kb on + strand, within GFF4639at 49.805 kb on - strand, within GFF4639at 50.144 kb on - strand, within GFF4639at 50.236 kb on + strand, within GFF4639at 50.464 kb on + strand, within GFF4639at 50.465 kb on - strand, within GFF4639at 50.629 kb on + strand, within GFF4639at 50.708 kb on - strandat 50.874 kb on + strand, within GFF4640at 50.874 kb on + strand, within GFF4640at 50.875 kb on - strand, within GFF4640at 50.876 kb on + strand, within GFF4640at 50.877 kb on - strand, within GFF4640at 50.877 kb on - strand, within GFF4640at 51.284 kb on - strandat 51.411 kb on + strandat 51.411 kb on + strandat 51.412 kb on - strandat 51.417 kb on - strandat 51.417 kb on - strandat 51.417 kb on - strandat 51.439 kb on - strandat 52.027 kb on + strand, within GFF4641at 52.027 kb on + strand, within GFF4641at 52.028 kb on - strand, within GFF4641at 52.028 kb on - strand, within GFF4641at 52.028 kb on - strand, within GFF4641at 52.047 kb on + strand, within GFF4641at 52.047 kb on + strand, within GFF4641at 52.047 kb on + strand, within GFF4641at 52.048 kb on - strand, within GFF4641at 52.048 kb on - strand, within GFF4641at 52.048 kb on - strand, within GFF4641at 52.048 kb on - strand, within GFF4641at 52.048 kb on - strand, within GFF4641at 52.158 kb on + strandat 52.158 kb on + strandat 52.158 kb on + strandat 52.158 kb on + strandat 52.158 kb on + strandat 52.158 kb on + strandat 52.159 kb on - strandat 52.277 kb on - strandat 52.277 kb on - strandat 52.277 kb on - strandat 52.280 kb on + strandat 52.280 kb on + strandat 52.280 kb on + strandat 52.281 kb on - strandat 52.281 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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49,798 + GFF4639 0.17 -0.6
49,798 + GFF4639 0.17 +1.8
49,798 + GFF4639 0.17 -0.2
49,798 + GFF4639 0.17 -0.5
49,798 + GFF4639 0.17 -0.0
49,798 + GFF4639 0.17 +0.3
49,798 + GFF4639 0.17 -0.2
49,798 + GFF4639 0.17 +0.7
49,798 + GFF4639 0.17 +0.2
49,799 - GFF4639 0.18 -0.1
49,799 - GFF4639 0.18 +0.7
49,799 - GFF4639 0.18 -0.7
49,799 - GFF4639 0.18 -0.4
49,799 - GFF4639 0.18 -0.5
49,799 - GFF4639 0.18 -0.3
49,799 - GFF4639 0.18 +0.6
49,799 - GFF4639 0.18 +0.6
49,799 - GFF4639 0.18 +0.2
49,799 - GFF4639 0.18 +0.5
49,799 - GFF4639 0.18 +0.2
49,799 - GFF4639 0.18 -0.9
49,799 - GFF4639 0.18 +0.9
49,799 - GFF4639 0.18 +0.1
49,799 - GFF4639 0.18 -0.3
49,799 - GFF4639 0.18 -0.6
49,799 - GFF4639 0.18 +1.3
49,799 - GFF4639 0.18 -0.0
49,799 - GFF4639 0.18 +0.1
49,804 + GFF4639 0.18 -0.3
49,805 - GFF4639 0.18 -0.4
50,144 - GFF4639 0.47 +0.3
50,236 + GFF4639 0.54 +0.2
50,464 + GFF4639 0.73 -0.3
50,465 - GFF4639 0.74 -0.8
50,629 + GFF4639 0.87 -1.7
50,708 - -0.3
50,874 + GFF4640 0.17 -0.4
50,874 + GFF4640 0.17 -0.1
50,875 - GFF4640 0.17 -0.5
50,876 + GFF4640 0.17 -0.5
50,877 - GFF4640 0.17 -0.6
50,877 - GFF4640 0.17 -0.4
51,284 - +1.3
51,411 + +0.4
51,411 + -0.4
51,412 - -0.5
51,417 - +0.2
51,417 - +0.2
51,417 - -0.4
51,439 - -0.0
52,027 + GFF4641 0.76 -0.3
52,027 + GFF4641 0.76 -0.6
52,028 - GFF4641 0.76 +0.7
52,028 - GFF4641 0.76 +0.6
52,028 - GFF4641 0.76 +0.4
52,047 + GFF4641 0.78 +0.0
52,047 + GFF4641 0.78 +0.4
52,047 + GFF4641 0.78 +0.2
52,048 - GFF4641 0.78 -0.7
52,048 - GFF4641 0.78 -1.0
52,048 - GFF4641 0.78 +1.0
52,048 - GFF4641 0.78 -0.2
52,048 - GFF4641 0.78 -0.0
52,158 + +0.3
52,158 + +0.2
52,158 + -0.3
52,158 + -0.5
52,158 + -1.0
52,158 + +0.3
52,159 - -0.3
52,277 - +0.4
52,277 - +0.3
52,277 - +0.2
52,280 + -0.5
52,280 + +0.1
52,280 + -0.6
52,281 - -0.3
52,281 - -0.3

Or see this region's nucleotide sequence