Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4632 and GFF4633 are separated by 121 nucleotides GFF4633 and GFF4634 are separated by 124 nucleotides GFF4634 and GFF4635 are separated by 221 nucleotides
GFF4632 - Trk system potassium uptake protein TrkI, at 41,051 to 42,559
GFF4632
GFF4633 - Protein ApaG, at 42,681 to 43,073
GFF4633
GFF4634 - O-succinylhomoserine sulfhydrylase, at 43,198 to 44,418
GFF4634
GFF4635 - dCTP deaminase, dUMP-forming, at 44,640 to 45,767
GFF4635
Position (kb) 43
44
45 Strain fitness (log2 ratio) -2
-1
0
1 at 42.620 kb on - strand at 42.634 kb on - strand at 42.772 kb on + strand, within GFF4633 at 42.772 kb on + strand, within GFF4633 at 42.773 kb on - strand, within GFF4633 at 42.773 kb on - strand, within GFF4633 at 42.974 kb on + strand, within GFF4633 at 42.976 kb on + strand, within GFF4633 at 43.024 kb on + strand, within GFF4633 at 43.050 kb on - strand at 43.073 kb on + strand at 43.073 kb on + strand at 43.073 kb on + strand at 43.074 kb on - strand at 43.083 kb on - strand at 43.083 kb on - strand at 43.521 kb on - strand, within GFF4634 at 43.521 kb on - strand, within GFF4634 at 43.521 kb on - strand, within GFF4634 at 43.769 kb on + strand, within GFF4634 at 43.770 kb on - strand, within GFF4634 at 43.770 kb on - strand, within GFF4634 at 44.270 kb on + strand, within GFF4634 at 44.344 kb on + strand at 44.344 kb on + strand at 44.368 kb on - strand at 44.511 kb on + strand at 44.512 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 42,620 - -0.9 42,634 - -0.5 42,772 + GFF4633 0.23 -1.2 42,772 + GFF4633 0.23 -0.8 42,773 - GFF4633 0.23 -0.9 42,773 - GFF4633 0.23 +0.0 42,974 + GFF4633 0.75 +0.8 42,976 + GFF4633 0.75 -0.7 43,024 + GFF4633 0.87 +0.3 43,050 - +0.0 43,073 + -0.3 43,073 + -1.5 43,073 + -1.0 43,074 - -0.2 43,083 - -0.8 43,083 - +0.8 43,521 - GFF4634 0.26 -0.3 43,521 - GFF4634 0.26 -0.4 43,521 - GFF4634 0.26 -2.0 43,769 + GFF4634 0.47 +0.2 43,770 - GFF4634 0.47 +0.3 43,770 - GFF4634 0.47 +0.6 44,270 + GFF4634 0.88 +0.0 44,344 + +0.5 44,344 + +0.3 44,368 - -0.3 44,511 + -0.1 44,512 - +0.1
Or see this region's nucleotide sequence