Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4617 and GFF4618 are separated by 233 nucleotides GFF4618 and GFF4619 overlap by 4 nucleotides GFF4619 and GFF4620 overlap by 4 nucleotides
GFF4617 - hypothetical protein, at 25,744 to 26,412
GFF4617
GFF4618 - HTH-type transcriptional regulator AcrR, at 26,646 to 27,323
GFF4618
GFF4619 - hypothetical protein, at 27,320 to 28,297
GFF4619
GFF4620 - Vitamin B12 import ATP-binding protein BtuD, at 28,294 to 29,274
GFF4620
Position (kb) 26
27
28 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 26.018 kb on + strand, within GFF4617 at 26.018 kb on + strand, within GFF4617 at 26.018 kb on + strand, within GFF4617 at 26.018 kb on + strand, within GFF4617 at 26.018 kb on + strand, within GFF4617 at 26.019 kb on - strand, within GFF4617 at 26.075 kb on + strand, within GFF4617 at 26.228 kb on + strand, within GFF4617 at 26.228 kb on + strand, within GFF4617 at 26.247 kb on + strand, within GFF4617 at 26.248 kb on - strand, within GFF4617 at 26.248 kb on - strand, within GFF4617 at 26.248 kb on - strand, within GFF4617 at 26.248 kb on - strand, within GFF4617 at 26.366 kb on - strand at 26.366 kb on - strand at 26.366 kb on - strand at 26.445 kb on + strand at 26.613 kb on - strand at 26.850 kb on + strand, within GFF4618 at 26.850 kb on + strand, within GFF4618 at 26.851 kb on - strand, within GFF4618 at 27.078 kb on + strand, within GFF4618 at 27.078 kb on + strand, within GFF4618 at 27.079 kb on - strand, within GFF4618 at 27.079 kb on - strand, within GFF4618 at 27.082 kb on - strand, within GFF4618 at 27.082 kb on - strand, within GFF4618 at 27.082 kb on - strand, within GFF4618 at 27.428 kb on + strand, within GFF4619 at 27.779 kb on + strand, within GFF4619 at 27.779 kb on + strand, within GFF4619 at 27.780 kb on - strand, within GFF4619 at 27.780 kb on - strand, within GFF4619 at 27.780 kb on - strand, within GFF4619 at 27.971 kb on + strand, within GFF4619 at 27.971 kb on + strand, within GFF4619 at 27.971 kb on + strand, within GFF4619 at 27.972 kb on - strand, within GFF4619 at 27.975 kb on - strand, within GFF4619 at 28.166 kb on + strand, within GFF4619 at 28.166 kb on + strand, within GFF4619 at 28.168 kb on + strand, within GFF4619 at 28.184 kb on + strand, within GFF4619 at 28.184 kb on + strand, within GFF4619 at 28.185 kb on - strand, within GFF4619 at 28.214 kb on + strand at 28.214 kb on + strand at 28.214 kb on + strand at 28.214 kb on + strand at 28.215 kb on - strand at 28.215 kb on - strand at 28.217 kb on - strand at 28.217 kb on - strand at 28.217 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 26,018 + GFF4617 0.41 -0.2 26,018 + GFF4617 0.41 -1.1 26,018 + GFF4617 0.41 -0.7 26,018 + GFF4617 0.41 -0.4 26,018 + GFF4617 0.41 +0.0 26,019 - GFF4617 0.41 -0.4 26,075 + GFF4617 0.49 -1.1 26,228 + GFF4617 0.72 -0.3 26,228 + GFF4617 0.72 -0.1 26,247 + GFF4617 0.75 +0.6 26,248 - GFF4617 0.75 -0.1 26,248 - GFF4617 0.75 +0.2 26,248 - GFF4617 0.75 +0.6 26,248 - GFF4617 0.75 +0.5 26,366 - +0.4 26,366 - +0.1 26,366 - -0.7 26,445 + -0.4 26,613 - -0.0 26,850 + GFF4618 0.30 +0.0 26,850 + GFF4618 0.30 -0.1 26,851 - GFF4618 0.30 +0.4 27,078 + GFF4618 0.64 -2.8 27,078 + GFF4618 0.64 +1.1 27,079 - GFF4618 0.64 -0.2 27,079 - GFF4618 0.64 +0.4 27,082 - GFF4618 0.64 +1.4 27,082 - GFF4618 0.64 -0.8 27,082 - GFF4618 0.64 +0.0 27,428 + GFF4619 0.11 +0.4 27,779 + GFF4619 0.47 -0.3 27,779 + GFF4619 0.47 -1.2 27,780 - GFF4619 0.47 -0.1 27,780 - GFF4619 0.47 -0.1 27,780 - GFF4619 0.47 -1.1 27,971 + GFF4619 0.67 +1.2 27,971 + GFF4619 0.67 +0.0 27,971 + GFF4619 0.67 +0.0 27,972 - GFF4619 0.67 -0.7 27,975 - GFF4619 0.67 +1.1 28,166 + GFF4619 0.87 +1.3 28,166 + GFF4619 0.87 +0.5 28,168 + GFF4619 0.87 +1.3 28,184 + GFF4619 0.88 -0.1 28,184 + GFF4619 0.88 +0.5 28,185 - GFF4619 0.88 -0.0 28,214 + +0.6 28,214 + -0.1 28,214 + -1.2 28,214 + +0.1 28,215 - -0.4 28,215 - +0.2 28,217 - -0.9 28,217 - +0.4 28,217 - +1.2
Or see this region's nucleotide sequence