Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4596 and GFF4597 are separated by 10 nucleotides GFF4597 and GFF4598 are separated by 106 nucleotides GFF4598 and GFF4599 are separated by 24 nucleotides GFF4599 and GFF4600 are separated by 127 nucleotides
GFF4596 - Allantoinase, at 4,673 to 6,109
GFF4596
GFF4597 - 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase LinX, at 6,120 to 6,911
GFF4597
GFF4598 - Riboflavin-binding protein RibY, at 7,018 to 8,073
GFF4598
GFF4599 - Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB, at 8,098 to 8,841
GFF4599
GFF4600 - HTH-type transcriptional regulator GltC, at 8,969 to 9,883
GFF4600
Position (kb) 7
8
9 Strain fitness (log2 ratio) -1
0
1
2 at 6.177 kb on + strand at 6.244 kb on + strand, within GFF4597 at 6.244 kb on + strand, within GFF4597 at 6.245 kb on - strand, within GFF4597 at 6.439 kb on + strand, within GFF4597 at 6.440 kb on - strand, within GFF4597 at 6.440 kb on - strand, within GFF4597 at 7.427 kb on + strand, within GFF4598 at 7.427 kb on + strand, within GFF4598 at 7.428 kb on - strand, within GFF4598 at 7.428 kb on - strand, within GFF4598 at 7.487 kb on + strand, within GFF4598 at 7.560 kb on - strand, within GFF4598 at 7.727 kb on + strand, within GFF4598 at 7.728 kb on - strand, within GFF4598 at 7.728 kb on - strand, within GFF4598 at 7.728 kb on - strand, within GFF4598 at 7.805 kb on + strand, within GFF4598 at 7.806 kb on - strand, within GFF4598 at 7.806 kb on - strand, within GFF4598 at 7.806 kb on - strand, within GFF4598 at 7.934 kb on + strand, within GFF4598 at 7.935 kb on - strand, within GFF4598 at 7.944 kb on + strand, within GFF4598 at 7.944 kb on + strand, within GFF4598 at 7.945 kb on - strand, within GFF4598 at 7.945 kb on - strand, within GFF4598 at 8.100 kb on - strand at 8.198 kb on + strand, within GFF4599 at 8.198 kb on + strand, within GFF4599 at 8.198 kb on + strand, within GFF4599 at 8.198 kb on + strand, within GFF4599 at 8.198 kb on + strand, within GFF4599 at 8.198 kb on + strand, within GFF4599 at 8.199 kb on - strand, within GFF4599 at 8.199 kb on - strand, within GFF4599 at 8.246 kb on + strand, within GFF4599 at 8.492 kb on + strand, within GFF4599 at 8.492 kb on + strand, within GFF4599 at 8.842 kb on + strand at 8.842 kb on + strand at 8.842 kb on + strand at 8.842 kb on + strand at 8.842 kb on + strand at 8.843 kb on - strand at 8.843 kb on - strand at 8.993 kb on + strand at 8.993 kb on + strand at 8.993 kb on + strand at 8.993 kb on + strand at 8.993 kb on + strand at 8.994 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 6,177 + -0.3 6,244 + GFF4597 0.16 -0.2 6,244 + GFF4597 0.16 +1.3 6,245 - GFF4597 0.16 +0.2 6,439 + GFF4597 0.40 +0.9 6,440 - GFF4597 0.40 -0.5 6,440 - GFF4597 0.40 -0.5 7,427 + GFF4598 0.39 +0.4 7,427 + GFF4598 0.39 +0.6 7,428 - GFF4598 0.39 +0.8 7,428 - GFF4598 0.39 +0.1 7,487 + GFF4598 0.44 -0.0 7,560 - GFF4598 0.51 +0.9 7,727 + GFF4598 0.67 -0.0 7,728 - GFF4598 0.67 +0.2 7,728 - GFF4598 0.67 -0.3 7,728 - GFF4598 0.67 -0.4 7,805 + GFF4598 0.75 +0.4 7,806 - GFF4598 0.75 -0.4 7,806 - GFF4598 0.75 -0.6 7,806 - GFF4598 0.75 +0.3 7,934 + GFF4598 0.87 +0.1 7,935 - GFF4598 0.87 -0.1 7,944 + GFF4598 0.88 -0.1 7,944 + GFF4598 0.88 +1.6 7,945 - GFF4598 0.88 +0.2 7,945 - GFF4598 0.88 -0.4 8,100 - -0.1 8,198 + GFF4599 0.13 -0.2 8,198 + GFF4599 0.13 -0.6 8,198 + GFF4599 0.13 -0.4 8,198 + GFF4599 0.13 +1.1 8,198 + GFF4599 0.13 +0.4 8,198 + GFF4599 0.13 -0.1 8,199 - GFF4599 0.14 +0.7 8,199 - GFF4599 0.14 +1.1 8,246 + GFF4599 0.20 +1.9 8,492 + GFF4599 0.53 +0.7 8,492 + GFF4599 0.53 -0.1 8,842 + -0.5 8,842 + -0.1 8,842 + +0.5 8,842 + +0.3 8,842 + +0.5 8,843 - +0.8 8,843 - +1.6 8,993 + +0.7 8,993 + +0.3 8,993 + +0.0 8,993 + -0.0 8,993 + +0.5 8,994 - +1.4
Or see this region's nucleotide sequence