Strain Fitness in Xanthobacter sp. DMC5 around GFF4594

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4593 and GFF4594 are separated by 8 nucleotidesGFF4594 and GFF4595 overlap by 4 nucleotidesGFF4595 and GFF4596 overlap by 4 nucleotides GFF4593 - Cyanuric acid amidohydrolase, at 1,976 to 3,070 GFF4593 GFF4594 - Riboflavin transport system permease protein RibX, at 3,079 to 3,852 GFF4594 GFF4595 - Aliphatic sulfonates import ATP-binding protein SsuB, at 3,849 to 4,676 GFF4595 GFF4596 - Allantoinase, at 4,673 to 6,109 GFF4596 Position (kb) 3 4Strain fitness (log2 ratio) -2 -1 0 1 2at 2.079 kb on + strandat 2.079 kb on + strandat 2.079 kb on + strandat 2.079 kb on + strandat 2.079 kb on + strandat 2.080 kb on - strandat 2.080 kb on - strandat 2.080 kb on - strandat 2.080 kb on - strandat 2.080 kb on - strandat 2.080 kb on - strandat 2.080 kb on - strandat 2.080 kb on - strandat 2.080 kb on - strandat 2.080 kb on - strandat 2.080 kb on - strandat 2.090 kb on - strand, within GFF4593at 2.152 kb on + strand, within GFF4593at 2.152 kb on + strand, within GFF4593at 2.152 kb on + strand, within GFF4593at 2.152 kb on + strand, within GFF4593at 2.152 kb on + strand, within GFF4593at 2.152 kb on + strand, within GFF4593at 2.153 kb on - strand, within GFF4593at 2.173 kb on + strand, within GFF4593at 2.174 kb on - strand, within GFF4593at 2.577 kb on - strand, within GFF4593at 2.639 kb on - strand, within GFF4593at 2.639 kb on - strand, within GFF4593at 2.773 kb on + strand, within GFF4593at 2.972 kb on - strandat 2.972 kb on - strandat 3.152 kb on + strandat 3.326 kb on - strand, within GFF4594at 3.329 kb on + strand, within GFF4594at 3.562 kb on + strand, within GFF4594at 3.563 kb on - strand, within GFF4594at 3.563 kb on - strand, within GFF4594at 3.563 kb on - strand, within GFF4594at 3.575 kb on + strand, within GFF4594at 3.587 kb on + strand, within GFF4594at 3.587 kb on + strand, within GFF4594at 3.588 kb on - strand, within GFF4594at 3.588 kb on - strand, within GFF4594at 3.588 kb on - strand, within GFF4594at 3.668 kb on + strand, within GFF4594at 3.669 kb on - strand, within GFF4594at 3.669 kb on - strand, within GFF4594at 3.669 kb on - strand, within GFF4594at 3.669 kb on - strand, within GFF4594at 3.669 kb on - strand, within GFF4594at 3.845 kb on + strandat 3.846 kb on - strandat 3.846 kb on - strandat 3.846 kb on - strandat 3.846 kb on - strandat 3.846 kb on - strandat 3.846 kb on - strandat 3.940 kb on + strand, within GFF4595at 3.940 kb on + strand, within GFF4595at 3.940 kb on + strand, within GFF4595at 3.940 kb on + strand, within GFF4595at 3.940 kb on + strand, within GFF4595at 3.940 kb on + strand, within GFF4595at 3.949 kb on + strand, within GFF4595at 4.624 kb on + strandat 4.624 kb on + strandat 4.624 kb on + strandat 4.625 kb on - strandat 4.625 kb on - strandat 4.727 kb on - strandat 4.727 kb on - strandat 4.840 kb on + strand, within GFF4596at 4.841 kb on - strand, within GFF4596at 4.841 kb on - strand, within GFF4596

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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2,079 + +0.3
2,079 + -0.7
2,079 + -0.3
2,079 + -0.0
2,079 + -0.2
2,080 - -0.1
2,080 - -0.6
2,080 - -0.6
2,080 - -0.1
2,080 - -0.5
2,080 - -0.6
2,080 - -0.1
2,080 - +0.3
2,080 - +0.2
2,080 - +0.1
2,080 - -0.2
2,090 - GFF4593 0.10 +0.0
2,152 + GFF4593 0.16 +0.2
2,152 + GFF4593 0.16 -0.1
2,152 + GFF4593 0.16 +0.3
2,152 + GFF4593 0.16 +0.4
2,152 + GFF4593 0.16 -0.2
2,152 + GFF4593 0.16 +1.8
2,153 - GFF4593 0.16 -0.7
2,173 + GFF4593 0.18 +0.4
2,174 - GFF4593 0.18 -0.2
2,577 - GFF4593 0.55 -0.2
2,639 - GFF4593 0.61 +0.2
2,639 - GFF4593 0.61 -0.6
2,773 + GFF4593 0.73 +0.3
2,972 - -0.8
2,972 - -0.6
3,152 + -0.1
3,326 - GFF4594 0.32 +0.3
3,329 + GFF4594 0.32 -0.4
3,562 + GFF4594 0.62 -0.1
3,563 - GFF4594 0.63 +0.3
3,563 - GFF4594 0.63 +0.4
3,563 - GFF4594 0.63 +0.2
3,575 + GFF4594 0.64 +0.0
3,587 + GFF4594 0.66 +0.7
3,587 + GFF4594 0.66 +0.4
3,588 - GFF4594 0.66 -1.2
3,588 - GFF4594 0.66 +1.0
3,588 - GFF4594 0.66 -0.4
3,668 + GFF4594 0.76 -0.5
3,669 - GFF4594 0.76 -0.7
3,669 - GFF4594 0.76 +0.6
3,669 - GFF4594 0.76 +0.4
3,669 - GFF4594 0.76 +0.5
3,669 - GFF4594 0.76 -0.2
3,845 + +0.2
3,846 - -0.5
3,846 - +0.6
3,846 - +0.9
3,846 - -0.3
3,846 - -0.1
3,846 - +0.5
3,940 + GFF4595 0.11 +0.4
3,940 + GFF4595 0.11 +1.4
3,940 + GFF4595 0.11 +1.0
3,940 + GFF4595 0.11 -1.0
3,940 + GFF4595 0.11 -0.2
3,940 + GFF4595 0.11 +0.6
3,949 + GFF4595 0.12 -1.8
4,624 + +0.1
4,624 + -0.3
4,624 + -1.0
4,625 - +0.1
4,625 - -0.2
4,727 - -0.1
4,727 - +0.3
4,840 + GFF4596 0.12 -1.2
4,841 - GFF4596 0.12 -0.2
4,841 - GFF4596 0.12 -0.2

Or see this region's nucleotide sequence