Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF456 and GFF457 are separated by 120 nucleotides GFF457 and GFF458 are separated by 155 nucleotides GFF458 and GFF459 are separated by 50 nucleotides
GFF456 - Bicarbonate transport ATP-binding protein CmpD, at 484,608 to 485,477
GFF456
GFF457 - hypothetical protein, at 485,598 to 486,644
GFF457
GFF458 - hypothetical protein, at 486,800 to 487,543
GFF458
GFF459 - hypothetical protein, at 487,594 to 488,688
GFF459
Position (kb) 485
486
487 Strain fitness (log2 ratio) -1
0
1 at 484.750 kb on + strand, within GFF456 at 484.751 kb on - strand, within GFF456 at 484.790 kb on - strand, within GFF456 at 485.071 kb on + strand, within GFF456 at 485.072 kb on - strand, within GFF456 at 485.525 kb on + strand at 485.632 kb on + strand at 485.632 kb on + strand at 485.633 kb on - strand at 485.633 kb on - strand at 485.644 kb on + strand at 485.645 kb on - strand at 485.735 kb on + strand, within GFF457 at 485.785 kb on + strand, within GFF457 at 485.785 kb on + strand, within GFF457 at 485.785 kb on + strand, within GFF457 at 485.786 kb on - strand, within GFF457 at 485.786 kb on - strand, within GFF457 at 485.806 kb on + strand, within GFF457 at 485.807 kb on - strand, within GFF457 at 485.807 kb on - strand, within GFF457 at 485.807 kb on - strand, within GFF457 at 485.807 kb on - strand, within GFF457 at 485.810 kb on - strand, within GFF457 at 485.810 kb on - strand, within GFF457 at 485.810 kb on - strand, within GFF457 at 485.938 kb on + strand, within GFF457 at 485.938 kb on + strand, within GFF457 at 485.939 kb on - strand, within GFF457 at 486.169 kb on + strand, within GFF457 at 486.169 kb on + strand, within GFF457 at 486.170 kb on - strand, within GFF457 at 486.260 kb on - strand, within GFF457 at 486.358 kb on + strand, within GFF457 at 486.358 kb on + strand, within GFF457 at 486.358 kb on + strand, within GFF457 at 486.359 kb on - strand, within GFF457 at 486.359 kb on - strand, within GFF457 at 486.359 kb on - strand, within GFF457 at 486.497 kb on - strand, within GFF457 at 486.497 kb on - strand, within GFF457 at 486.660 kb on - strand at 487.067 kb on + strand, within GFF458 at 487.067 kb on + strand, within GFF458 at 487.068 kb on - strand, within GFF458 at 487.184 kb on - strand, within GFF458 at 487.541 kb on + strand at 487.542 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 484,750 + GFF456 0.16 -0.1 484,751 - GFF456 0.16 -0.5 484,790 - GFF456 0.21 +0.2 485,071 + GFF456 0.53 -0.6 485,072 - GFF456 0.53 -0.5 485,525 + -1.3 485,632 + +0.2 485,632 + -0.1 485,633 - -0.9 485,633 - -0.4 485,644 + -0.2 485,645 - -0.7 485,735 + GFF457 0.13 +1.5 485,785 + GFF457 0.18 -0.3 485,785 + GFF457 0.18 +0.2 485,785 + GFF457 0.18 -0.4 485,786 - GFF457 0.18 -0.4 485,786 - GFF457 0.18 -0.1 485,806 + GFF457 0.20 -0.2 485,807 - GFF457 0.20 -0.3 485,807 - GFF457 0.20 -0.3 485,807 - GFF457 0.20 -0.4 485,807 - GFF457 0.20 +0.1 485,810 - GFF457 0.20 -0.3 485,810 - GFF457 0.20 -0.0 485,810 - GFF457 0.20 -0.6 485,938 + GFF457 0.32 -1.4 485,938 + GFF457 0.32 -0.3 485,939 - GFF457 0.33 -0.0 486,169 + GFF457 0.55 +1.2 486,169 + GFF457 0.55 -0.1 486,170 - GFF457 0.55 -0.1 486,260 - GFF457 0.63 -0.7 486,358 + GFF457 0.73 +0.6 486,358 + GFF457 0.73 -0.1 486,358 + GFF457 0.73 +0.3 486,359 - GFF457 0.73 +1.2 486,359 - GFF457 0.73 +1.3 486,359 - GFF457 0.73 +0.3 486,497 - GFF457 0.86 +0.4 486,497 - GFF457 0.86 +0.9 486,660 - +0.4 487,067 + GFF458 0.36 -0.6 487,067 + GFF458 0.36 -0.2 487,068 - GFF458 0.36 +0.7 487,184 - GFF458 0.52 +1.4 487,541 + -0.8 487,542 - +0.4
Or see this region's nucleotide sequence