Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4567 and GFF4568 are separated by 84 nucleotides GFF4568 and GFF4569 are separated by 186 nucleotides GFF4569 and GFF4570 overlap by 4 nucleotides GFF4570 and GFF4571 are separated by 10 nucleotides
GFF4567 - 3-oxoacyl-[acyl-carrier-protein] synthase 2, at 153,681 to 154,886
GFF4567
GFF4568 - Fumarylpyruvate hydrolase, at 154,971 to 155,660
GFF4568
GFF4569 - Limonene 1,2-monooxygenase, at 155,847 to 156,830
GFF4569
GFF4570 - Cytidylate kinase, at 156,827 to 157,447
GFF4570
GFF4571 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 157,458 to 158,840
GFF4571
Position (kb) 155
156
157 Strain fitness (log2 ratio) -1
0
1 at 154.942 kb on - strand at 154.942 kb on - strand at 154.942 kb on - strand at 155.452 kb on + strand, within GFF4568 at 155.539 kb on + strand, within GFF4568 at 155.576 kb on - strand, within GFF4568 at 155.576 kb on - strand, within GFF4568 at 155.576 kb on - strand, within GFF4568 at 155.650 kb on + strand at 155.651 kb on - strand at 155.651 kb on - strand at 155.691 kb on - strand at 155.871 kb on + strand at 155.872 kb on - strand at 155.892 kb on + strand at 155.892 kb on + strand at 155.892 kb on + strand at 155.892 kb on + strand at 155.892 kb on + strand at 155.893 kb on - strand at 156.024 kb on + strand, within GFF4569 at 156.465 kb on + strand, within GFF4569
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 154,942 - -0.3 154,942 - -0.6 154,942 - +0.2 155,452 + GFF4568 0.70 -0.1 155,539 + GFF4568 0.82 +0.3 155,576 - GFF4568 0.88 -0.1 155,576 - GFF4568 0.88 +0.1 155,576 - GFF4568 0.88 +0.2 155,650 + +1.2 155,651 - -0.5 155,651 - -0.8 155,691 - +0.6 155,871 + +0.9 155,872 - -0.2 155,892 + +0.4 155,892 + -0.5 155,892 + -0.3 155,892 + -0.6 155,892 + -0.1 155,893 - +0.5 156,024 + GFF4569 0.18 -1.4 156,465 + GFF4569 0.63 -0.6
Or see this region's nucleotide sequence