Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4533 and GFF4534 overlap by 4 nucleotides GFF4534 and GFF4535 overlap by 4 nucleotides GFF4535 and GFF4536 are separated by 86 nucleotides
GFF4533 - Caffeine dehydrogenase subunit alpha, at 108,754 to 111,156
GFF4533
GFF4534 - hypothetical protein, at 111,153 to 111,974
GFF4534
GFF4535 - hypothetical protein, at 111,971 to 113,098
GFF4535
GFF4536 - 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin--NAD(+) reductase component, at 113,185 to 116,061
GFF4536
Position (kb) 111
112
113
114 Strain fitness (log2 ratio) -1
0
1 at 111.570 kb on - strand, within GFF4534 at 112.185 kb on + strand, within GFF4535 at 112.185 kb on + strand, within GFF4535 at 112.185 kb on + strand, within GFF4535 at 112.185 kb on + strand, within GFF4535 at 112.186 kb on - strand, within GFF4535 at 112.186 kb on - strand, within GFF4535 at 112.186 kb on - strand, within GFF4535 at 112.385 kb on + strand, within GFF4535 at 112.386 kb on - strand, within GFF4535 at 112.557 kb on + strand, within GFF4535 at 112.558 kb on - strand, within GFF4535 at 112.723 kb on - strand, within GFF4535 at 113.262 kb on + strand at 113.262 kb on + strand at 113.344 kb on + strand at 113.344 kb on + strand at 113.345 kb on - strand at 113.345 kb on - strand at 113.345 kb on - strand at 113.345 kb on - strand at 113.345 kb on - strand at 113.446 kb on + strand at 113.447 kb on - strand at 113.447 kb on - strand at 113.447 kb on - strand at 113.681 kb on - strand, within GFF4536 at 113.860 kb on + strand, within GFF4536
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 111,570 - GFF4534 0.51 +0.1 112,185 + GFF4535 0.19 +0.8 112,185 + GFF4535 0.19 -0.4 112,185 + GFF4535 0.19 -1.1 112,185 + GFF4535 0.19 +0.3 112,186 - GFF4535 0.19 +0.0 112,186 - GFF4535 0.19 -0.5 112,186 - GFF4535 0.19 +0.2 112,385 + GFF4535 0.37 -0.2 112,386 - GFF4535 0.37 +0.6 112,557 + GFF4535 0.52 +0.7 112,558 - GFF4535 0.52 +0.1 112,723 - GFF4535 0.67 -1.7 113,262 + +0.2 113,262 + -0.4 113,344 + +0.0 113,344 + -0.9 113,345 - -1.1 113,345 - +0.9 113,345 - +0.4 113,345 - -0.6 113,345 - +0.8 113,446 + -0.2 113,447 - -0.7 113,447 - -1.0 113,447 - +0.4 113,681 - GFF4536 0.17 -0.2 113,860 + GFF4536 0.23 -0.6
Or see this region's nucleotide sequence