Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4503 and GFF4504 are separated by 109 nucleotides GFF4504 and GFF4505 are separated by 32 nucleotides
GFF4503 - putative secretion system apparatus ATP synthase SsaN, at 78,480 to 79,832
GFF4503
GFF4504 - Flagellar hook protein FlgE, at 79,942 to 81,198
GFF4504
GFF4505 - hypothetical protein, at 81,231 to 82,685
GFF4505
Position (kb) 79
80
81
82 Strain fitness (log2 ratio) -2
-1
0
1 at 78.972 kb on - strand, within GFF4503 at 79.297 kb on - strand, within GFF4503 at 79.356 kb on + strand, within GFF4503 at 79.357 kb on - strand, within GFF4503 at 79.752 kb on + strand at 79.752 kb on + strand at 79.752 kb on + strand at 79.753 kb on - strand at 80.047 kb on + strand at 80.047 kb on + strand at 80.104 kb on + strand, within GFF4504 at 80.104 kb on + strand, within GFF4504 at 80.104 kb on + strand, within GFF4504 at 80.105 kb on - strand, within GFF4504 at 80.125 kb on - strand, within GFF4504 at 80.125 kb on - strand, within GFF4504 at 80.125 kb on - strand, within GFF4504 at 80.167 kb on + strand, within GFF4504 at 80.167 kb on + strand, within GFF4504 at 80.167 kb on + strand, within GFF4504 at 80.168 kb on - strand, within GFF4504 at 80.168 kb on - strand, within GFF4504 at 80.168 kb on - strand, within GFF4504 at 80.168 kb on - strand, within GFF4504 at 80.323 kb on + strand, within GFF4504 at 80.323 kb on + strand, within GFF4504 at 80.324 kb on - strand, within GFF4504 at 80.324 kb on - strand, within GFF4504 at 80.386 kb on - strand, within GFF4504 at 80.386 kb on - strand, within GFF4504 at 80.620 kb on + strand, within GFF4504 at 80.659 kb on + strand, within GFF4504 at 80.659 kb on + strand, within GFF4504 at 80.660 kb on - strand, within GFF4504 at 80.803 kb on + strand, within GFF4504 at 80.804 kb on - strand, within GFF4504 at 80.804 kb on - strand, within GFF4504 at 80.920 kb on + strand, within GFF4504 at 80.920 kb on + strand, within GFF4504 at 80.921 kb on - strand, within GFF4504 at 80.921 kb on - strand, within GFF4504 at 80.921 kb on - strand, within GFF4504 at 80.984 kb on - strand, within GFF4504 at 81.127 kb on + strand at 81.127 kb on + strand at 81.127 kb on + strand at 81.128 kb on - strand at 81.891 kb on + strand, within GFF4505 at 81.892 kb on - strand, within GFF4505 at 81.892 kb on - strand, within GFF4505 at 81.956 kb on + strand, within GFF4505 at 81.957 kb on - strand, within GFF4505 at 81.957 kb on - strand, within GFF4505 at 81.957 kb on - strand, within GFF4505 at 82.092 kb on + strand, within GFF4505
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 78,972 - GFF4503 0.36 +0.4 79,297 - GFF4503 0.60 +0.1 79,356 + GFF4503 0.65 -0.1 79,357 - GFF4503 0.65 +0.1 79,752 + +0.7 79,752 + -0.6 79,752 + +0.3 79,753 - -0.6 80,047 + -0.2 80,047 + -0.0 80,104 + GFF4504 0.13 +1.2 80,104 + GFF4504 0.13 -0.2 80,104 + GFF4504 0.13 -1.4 80,105 - GFF4504 0.13 -0.2 80,125 - GFF4504 0.15 +0.6 80,125 - GFF4504 0.15 -0.2 80,125 - GFF4504 0.15 -0.7 80,167 + GFF4504 0.18 -1.1 80,167 + GFF4504 0.18 +0.1 80,167 + GFF4504 0.18 +0.8 80,168 - GFF4504 0.18 -0.4 80,168 - GFF4504 0.18 -1.0 80,168 - GFF4504 0.18 -0.5 80,168 - GFF4504 0.18 -0.2 80,323 + GFF4504 0.30 -0.1 80,323 + GFF4504 0.30 -0.2 80,324 - GFF4504 0.30 -0.3 80,324 - GFF4504 0.30 -2.2 80,386 - GFF4504 0.35 +0.2 80,386 - GFF4504 0.35 +0.3 80,620 + GFF4504 0.54 +0.1 80,659 + GFF4504 0.57 -1.4 80,659 + GFF4504 0.57 +0.7 80,660 - GFF4504 0.57 +0.8 80,803 + GFF4504 0.68 -0.1 80,804 - GFF4504 0.69 +0.6 80,804 - GFF4504 0.69 -1.4 80,920 + GFF4504 0.78 -0.1 80,920 + GFF4504 0.78 +0.6 80,921 - GFF4504 0.78 -0.4 80,921 - GFF4504 0.78 +0.3 80,921 - GFF4504 0.78 +0.1 80,984 - GFF4504 0.83 -0.1 81,127 + +0.3 81,127 + -0.6 81,127 + -0.4 81,128 - +0.3 81,891 + GFF4505 0.45 +0.4 81,892 - GFF4505 0.45 -1.2 81,892 - GFF4505 0.45 -0.5 81,956 + GFF4505 0.50 +1.1 81,957 - GFF4505 0.50 +0.6 81,957 - GFF4505 0.50 -0.6 81,957 - GFF4505 0.50 -0.6 82,092 + GFF4505 0.59 -0.9
Or see this region's nucleotide sequence