Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4486 and GFF4487 overlap by 1 nucleotides GFF4487 and GFF4488 are separated by 119 nucleotides GFF4488 and GFF4489 overlap by 4 nucleotides GFF4489 and GFF4490 are separated by 56 nucleotides
GFF4486 - Flagellar L-ring protein, at 66,182 to 66,919
GFF4486
GFF4487 - hypothetical protein, at 66,919 to 67,605
GFF4487
GFF4488 - Flagellar P-ring protein, at 67,725 to 68,831
GFF4488
GFF4489 - hypothetical protein, at 68,828 to 69,382
GFF4489
GFF4490 - Flagellar basal-body rod protein FlgG, at 69,439 to 70,227
GFF4490
Position (kb) 67
68
69 Strain fitness (log2 ratio) -2
-1
0
1
2 at 66.843 kb on + strand, within GFF4486 at 66.843 kb on + strand, within GFF4486 at 66.844 kb on - strand, within GFF4486 at 66.877 kb on + strand at 66.877 kb on + strand at 66.878 kb on - strand at 67.209 kb on - strand, within GFF4487 at 67.331 kb on + strand, within GFF4487 at 67.332 kb on - strand, within GFF4487 at 67.566 kb on - strand at 67.930 kb on + strand, within GFF4488 at 67.930 kb on + strand, within GFF4488 at 67.930 kb on + strand, within GFF4488 at 67.931 kb on - strand, within GFF4488 at 68.201 kb on + strand, within GFF4488 at 68.202 kb on - strand, within GFF4488 at 68.203 kb on + strand, within GFF4488 at 68.203 kb on + strand, within GFF4488 at 68.204 kb on - strand, within GFF4488 at 68.204 kb on - strand, within GFF4488 at 68.204 kb on - strand, within GFF4488 at 68.419 kb on + strand, within GFF4488 at 68.419 kb on + strand, within GFF4488 at 68.420 kb on - strand, within GFF4488 at 69.394 kb on + strand at 69.394 kb on + strand at 69.395 kb on - strand at 69.395 kb on - strand at 69.509 kb on + strand at 69.510 kb on - strand at 69.575 kb on + strand, within GFF4490 at 69.575 kb on + strand, within GFF4490 at 69.654 kb on - strand, within GFF4490 at 69.755 kb on + strand, within GFF4490 at 69.755 kb on + strand, within GFF4490 at 69.755 kb on + strand, within GFF4490 at 69.755 kb on + strand, within GFF4490 at 69.756 kb on - strand, within GFF4490 at 69.828 kb on - strand, within GFF4490
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 66,843 + GFF4486 0.90 -0.5 66,843 + GFF4486 0.90 +1.3 66,844 - GFF4486 0.90 -0.5 66,877 + -0.5 66,877 + -0.7 66,878 - +0.3 67,209 - GFF4487 0.42 -0.8 67,331 + GFF4487 0.60 +1.5 67,332 - GFF4487 0.60 +0.9 67,566 - +0.3 67,930 + GFF4488 0.19 -0.5 67,930 + GFF4488 0.19 -0.4 67,930 + GFF4488 0.19 -0.0 67,931 - GFF4488 0.19 +0.0 68,201 + GFF4488 0.43 +0.2 68,202 - GFF4488 0.43 +0.1 68,203 + GFF4488 0.43 -1.8 68,203 + GFF4488 0.43 +0.2 68,204 - GFF4488 0.43 -0.4 68,204 - GFF4488 0.43 +0.1 68,204 - GFF4488 0.43 +0.8 68,419 + GFF4488 0.63 +0.2 68,419 + GFF4488 0.63 +0.5 68,420 - GFF4488 0.63 +2.5 69,394 + -1.1 69,394 + +0.2 69,395 - -0.3 69,395 - -0.2 69,509 + +0.3 69,510 - -0.9 69,575 + GFF4490 0.17 +0.9 69,575 + GFF4490 0.17 -0.3 69,654 - GFF4490 0.27 +0.5 69,755 + GFF4490 0.40 +0.2 69,755 + GFF4490 0.40 -0.7 69,755 + GFF4490 0.40 +0.1 69,755 + GFF4490 0.40 +0.1 69,756 - GFF4490 0.40 +0.4 69,828 - GFF4490 0.49 -1.1
Or see this region's nucleotide sequence