Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4483 and GFF4484 are separated by 192 nucleotides GFF4484 and GFF4485 overlap by 4 nucleotides GFF4485 and GFF4486 are separated by 4 nucleotides
GFF4483 - hypothetical protein, at 63,608 to 64,651
GFF4483
GFF4484 - Flagellar biosynthetic protein FliP, at 64,844 to 65,671
GFF4484
GFF4485 - hypothetical protein, at 65,668 to 66,177
GFF4485
GFF4486 - Flagellar L-ring protein, at 66,182 to 66,919
GFF4486
Position (kb) 64
65
66 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 63.873 kb on + strand, within GFF4483 at 63.873 kb on + strand, within GFF4483 at 63.975 kb on + strand, within GFF4483 at 63.975 kb on + strand, within GFF4483 at 63.975 kb on + strand, within GFF4483 at 63.975 kb on + strand, within GFF4483 at 63.976 kb on - strand, within GFF4483 at 63.976 kb on - strand, within GFF4483 at 63.976 kb on - strand, within GFF4483 at 64.016 kb on - strand, within GFF4483 at 64.128 kb on + strand, within GFF4483 at 64.128 kb on + strand, within GFF4483 at 64.129 kb on - strand, within GFF4483 at 64.186 kb on + strand, within GFF4483 at 64.308 kb on + strand, within GFF4483 at 64.308 kb on + strand, within GFF4483 at 64.308 kb on + strand, within GFF4483 at 64.516 kb on - strand, within GFF4483 at 64.516 kb on - strand, within GFF4483 at 64.516 kb on - strand, within GFF4483 at 64.802 kb on + strand at 64.803 kb on - strand at 64.835 kb on - strand at 65.084 kb on + strand, within GFF4484 at 65.084 kb on + strand, within GFF4484 at 65.084 kb on + strand, within GFF4484 at 65.085 kb on - strand, within GFF4484 at 65.085 kb on - strand, within GFF4484 at 65.322 kb on + strand, within GFF4484 at 65.323 kb on - strand, within GFF4484 at 65.323 kb on - strand, within GFF4484 at 65.323 kb on - strand, within GFF4484 at 65.403 kb on + strand, within GFF4484 at 65.570 kb on + strand, within GFF4484 at 65.570 kb on + strand, within GFF4484 at 65.807 kb on + strand, within GFF4485 at 65.807 kb on + strand, within GFF4485 at 65.808 kb on - strand, within GFF4485 at 65.808 kb on - strand, within GFF4485 at 66.204 kb on + strand at 66.204 kb on + strand at 66.204 kb on + strand at 66.204 kb on + strand at 66.205 kb on - strand at 66.205 kb on - strand at 66.205 kb on - strand at 66.205 kb on - strand at 66.291 kb on + strand, within GFF4486 at 66.315 kb on - strand, within GFF4486 at 66.315 kb on - strand, within GFF4486 at 66.363 kb on + strand, within GFF4486 at 66.363 kb on + strand, within GFF4486 at 66.364 kb on - strand, within GFF4486 at 66.493 kb on + strand, within GFF4486 at 66.494 kb on - strand, within GFF4486 at 66.494 kb on - strand, within GFF4486
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 63,873 + GFF4483 0.25 +0.7 63,873 + GFF4483 0.25 -0.2 63,975 + GFF4483 0.35 -1.6 63,975 + GFF4483 0.35 -0.0 63,975 + GFF4483 0.35 -0.6 63,975 + GFF4483 0.35 -0.3 63,976 - GFF4483 0.35 +0.2 63,976 - GFF4483 0.35 +0.9 63,976 - GFF4483 0.35 +1.2 64,016 - GFF4483 0.39 +0.4 64,128 + GFF4483 0.50 -0.6 64,128 + GFF4483 0.50 -0.9 64,129 - GFF4483 0.50 -0.1 64,186 + GFF4483 0.55 +0.1 64,308 + GFF4483 0.67 +0.9 64,308 + GFF4483 0.67 +0.6 64,308 + GFF4483 0.67 -0.8 64,516 - GFF4483 0.87 +0.3 64,516 - GFF4483 0.87 +0.4 64,516 - GFF4483 0.87 +0.1 64,802 + -0.3 64,803 - -0.7 64,835 - -0.7 65,084 + GFF4484 0.29 -0.6 65,084 + GFF4484 0.29 +0.6 65,084 + GFF4484 0.29 +0.7 65,085 - GFF4484 0.29 +0.9 65,085 - GFF4484 0.29 -0.7 65,322 + GFF4484 0.58 -0.0 65,323 - GFF4484 0.58 +1.4 65,323 - GFF4484 0.58 -2.3 65,323 - GFF4484 0.58 -0.1 65,403 + GFF4484 0.68 +0.1 65,570 + GFF4484 0.88 -2.9 65,570 + GFF4484 0.88 +1.5 65,807 + GFF4485 0.27 +0.5 65,807 + GFF4485 0.27 -1.3 65,808 - GFF4485 0.27 +0.1 65,808 - GFF4485 0.27 -0.9 66,204 + -0.7 66,204 + +0.1 66,204 + -0.2 66,204 + -0.6 66,205 - -1.3 66,205 - +0.2 66,205 - +0.1 66,205 - -0.2 66,291 + GFF4486 0.15 +0.2 66,315 - GFF4486 0.18 +1.2 66,315 - GFF4486 0.18 +0.6 66,363 + GFF4486 0.25 +0.6 66,363 + GFF4486 0.25 -0.7 66,364 - GFF4486 0.25 +0.4 66,493 + GFF4486 0.42 -0.4 66,494 - GFF4486 0.42 +0.0 66,494 - GFF4486 0.42 -0.0
Or see this region's nucleotide sequence