Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF446 and GFF447 are separated by 8 nucleotides GFF447 and GFF448 are separated by 2 nucleotides GFF448 and GFF449 are separated by 12 nucleotides
GFF446 - hypothetical protein, at 469,862 to 470,860
GFF446
GFF447 - hypothetical protein, at 470,869 to 471,666
GFF447
GFF448 - Vitamin B12 import ATP-binding protein BtuD, at 471,669 to 472,463
GFF448
GFF449 - Alkyl hydroperoxide reductase subunit F, at 472,476 to 473,417
GFF449
Position (kb) 471
472
473 Strain fitness (log2 ratio) -1
0
1
2 at 470.731 kb on - strand, within GFF446 at 470.847 kb on - strand at 470.890 kb on + strand at 470.913 kb on + strand at 470.936 kb on + strand at 470.936 kb on + strand at 470.937 kb on - strand at 470.937 kb on - strand at 470.937 kb on - strand at 470.937 kb on - strand at 470.937 kb on - strand at 471.355 kb on + strand, within GFF447 at 472.326 kb on + strand, within GFF448 at 472.326 kb on + strand, within GFF448 at 472.326 kb on + strand, within GFF448 at 472.326 kb on + strand, within GFF448 at 472.477 kb on + strand at 472.477 kb on + strand at 472.664 kb on - strand, within GFF449 at 472.664 kb on - strand, within GFF449 at 472.756 kb on + strand, within GFF449 at 472.756 kb on + strand, within GFF449 at 472.757 kb on - strand, within GFF449 at 472.772 kb on - strand, within GFF449 at 472.835 kb on - strand, within GFF449 at 472.849 kb on - strand, within GFF449 at 472.849 kb on - strand, within GFF449 at 472.849 kb on - strand, within GFF449 at 472.893 kb on + strand, within GFF449 at 472.894 kb on - strand, within GFF449 at 472.948 kb on + strand, within GFF449 at 472.948 kb on + strand, within GFF449 at 472.948 kb on + strand, within GFF449 at 472.949 kb on - strand, within GFF449 at 472.949 kb on - strand, within GFF449 at 472.949 kb on - strand, within GFF449 at 473.403 kb on + strand at 473.403 kb on + strand at 473.404 kb on - strand at 473.460 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 470,731 - GFF446 0.87 +0.3 470,847 - +1.8 470,890 + -0.0 470,913 + -0.2 470,936 + -1.0 470,936 + +0.4 470,937 - +0.3 470,937 - +0.3 470,937 - -0.6 470,937 - -1.6 470,937 - +1.0 471,355 + GFF447 0.61 -0.1 472,326 + GFF448 0.83 -0.3 472,326 + GFF448 0.83 +0.8 472,326 + GFF448 0.83 -0.4 472,326 + GFF448 0.83 -0.5 472,477 + +0.3 472,477 + -0.5 472,664 - GFF449 0.20 +0.8 472,664 - GFF449 0.20 -0.4 472,756 + GFF449 0.30 +0.6 472,756 + GFF449 0.30 -0.1 472,757 - GFF449 0.30 +1.6 472,772 - GFF449 0.31 +0.4 472,835 - GFF449 0.38 +0.1 472,849 - GFF449 0.40 -0.2 472,849 - GFF449 0.40 -0.4 472,849 - GFF449 0.40 -0.9 472,893 + GFF449 0.44 +0.2 472,894 - GFF449 0.44 +0.1 472,948 + GFF449 0.50 -0.6 472,948 + GFF449 0.50 +0.3 472,948 + GFF449 0.50 +1.1 472,949 - GFF449 0.50 +0.1 472,949 - GFF449 0.50 -0.6 472,949 - GFF449 0.50 -1.5 473,403 + -0.7 473,403 + +0.0 473,404 - -0.4 473,460 + +0.4
Or see this region's nucleotide sequence